Data from: Ongoing hybridization obscures phylogenetic relationships in the Drosophila subquinaria species complex

Ginsberg PS, Humphreys DP, Dyer KA

Date Published: August 15, 2019

DOI: https://doi.org/10.5061/dryad.026np03

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Title MrBayes analyses
Downloaded 3 times
Description Sequence alignments with command blocks for all phylogenetic analyses using MrBayes 3.6.1
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Title Quartet_sampling
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Description Phylogenies in newick format with sequence alignments in phylip format and accompanying commands used for analyses.
Download Quartet_sampling.zip (142.8 Kb)
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Title *Beast .xml files
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Description *Beast v2.5.1 .xml files for three independent runs later combined in final results.
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Title Migrate-n analyses
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Description Parameter files for final Migrate-n v3.6.11 runs. Start parameters are estimated from data or from medians of previous runs. Models are designated as free: all parameters free to vary; StoR: migration from D. recens to D. subquinaria set to zero; RtoS: migration from D. subquinaria to D. recens set to zero; and symmetric: migration rates are constrained to be symmetric. Sequence alignments in modified phylip format are included.
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Title ABBA BABA tests
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Description Sequence alignments by species for nuclear concatenation (except Y-linked loci) and by locus with R script for analysis using evobiR package.
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When using this data, please cite the original publication:

Ginsberg PS, Humphreys DP, Dyer KA (2019) Ongoing hybridization obscures phylogenetic relationships in the Drosophila subquinaria species complex. Journal of Evolutionary Biology. https://doi.org/10.1111/jeb.13512

Additionally, please cite the Dryad data package:

Ginsberg PS, Humphreys DP, Dyer KA (2019) Data from: Ongoing hybridization obscures phylogenetic relationships in the Drosophila subquinaria species complex. Dryad Digital Repository. https://doi.org/10.5061/dryad.026np03
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