Data from: Genome-wide signals of drift and local adaptation during rapid lineage divergence in a songbird

Friis G, Fandos G, Zellmer AJ, McCormack JE, Faircloth BC, Milá B

Date Published: October 17, 2018

DOI: https://doi.org/10.5061/dryad.0nb2307

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Title genolike_map20_q20_snp16_maf002_ind32_430K.beagle
Downloaded 4 times
Description Input file of genotype likelihoods in Beagle format (.beagle.gz) for PCANGSD analysis.
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Title ORJUSTRUx8_biall_dp450_q40_perpopmiss075_hwe00001_maf002_LD02_neutral01
Downloaded 1 time
Description Dataset of 16,858 independent neutral SNPs from 64 samples in vcf format for STRUCTURE analysis.
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Title ORJU06x12_biall_dp450_q40_maf002_nomissing_hwe00001_noZ_neutral01
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Description Dataset of 15,209 neutral SNPs used in the PCA intended for population structure correction in the redundancy analysis (RDA).
Download ORJU06x12_biall_dp450_q40_maf002_nomissin...01.vcf (38.00 Mb)
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Title ORJU06x12_biall_dp450_q40_maf002_nomissing_hwe00001_noZ
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Description Dataset of 15,252 SNPs used in the redundancy analysis.
Download ORJU06x12_biall_dp450_q40_maf002_nomissin...oZ.vcf (38.10 Mb)
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Title ORJU06x12_biall_dp450_q40_maf002_nomissing_hwe00001_sel01_BAYESCENV
Downloaded 2 times
Description Subset of 49 SNP outliers identified with BayScEnv for the second redundancy analysis in the manuscript.
Download ORJU06x12_biall_dp450_q40_maf002_nomissin...NV.vcf (145.3 Kb)
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Title ORJUGEO_coords_ALLSAMPLES
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Description Table of sample location and geographic coordinates for all sequenced samples of the study.
Download ORJUGEO_coords_ALLSAMPLES.xlsx (19.45 Kb)
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Title ORJUGEO_coords_ClimVariables
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Description Sample data and WorldClim environmental data (Fick, S.E. and R.J. Hijmans, 2017. Worldclim 2: New 1-km spatial resolution climate surfaces for global land areas. International Journal of Climatology.) for each one of the samples included in the genotype-environment association analyses.
Download ORJUGEO_coords_ClimVariables.xlsx (23.95 Kb)
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When using this data, please cite the original publication:

Friis G, Fandos G, Zellmer AJ, McCormack JE, Faircloth BC, Milá B (2018) Genome-wide signals of drift and local adaptation during rapid lineage divergence in a songbird. Molecular Ecology 27(24): 5137-5153. https://doi.org/10.1111/mec.14946

Additionally, please cite the Dryad data package:

Friis G, Fandos G, Zellmer AJ, McCormack JE, Faircloth BC, Milá B (2018) Data from: Genome-wide signals of drift and local adaptation during rapid lineage divergence in a songbird. Dryad Digital Repository. https://doi.org/10.5061/dryad.0nb2307
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