Data from: Biogeographical network analysis of cretaceous terrestrial tetrapods: a phylogeny-based approach

Kubo T

Date Published: April 16, 2019

DOI: https://doi.org/10.5061/dryad.3q11m8g

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Title bdtree results
Downloaded 7 times
Description The results of simulations for testing rate of unusable node and utility of network indices. The file includes means and variances of the ratio of unusable nodes and the three indices LD, ALW and EI for each q value, number of taxa, and number of areas. The number of simulations in which the ALW could not be calculated was also recorded in the file.
Download bdtree results.csv (87.69 Kb)
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Title data and tree
Downloaded 5 times
Description Phylogenetic trees, age and biogeographical data for terrestrial crocodyliforms, terrestrial turtles, non-avian dinosaurs, avians, and pterosaurs that were used to construct biogeographical networks.
Download data and tree.rar (24.04 Kb)
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Title rcode0801
Downloaded 7 times
Description Code for R (R Development Core Team 2017) that calculates an adjacency matrix from a phylogenetic tree and the biogeographical regions of all terminal taxa. If age information is provided for all terminal taxa, then this code can conduct time slicing.
Download rcode0801.txt (3.677 Kb)
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Title results of taxa dropping simulations
Downloaded 4 times
Description Results of simulation that test the effect of taxa pruning from a phylogenetic tree on the constructed biogeographical network. These taxa pruning correspond to sampling and taphonomic biases on fossil taxa.
Download results of taxa dropping simulations.xlsx (68.36 Kb)
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Title Fig. S5
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Description An animation of 3D scatter plot of mean ALW.
Download mean ALW bdtree .gif (4.627 Mb)
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Title Fig. S7
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Description An animation of 3D scatter plot of mean EI.
Download mean EI bdtree .gif (12.30 Mb)
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Title Fig S3
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Description An animation of 3D scatter plot of mean LD.
Download mean LD bdtree .gif (7.044 Mb)
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Title Fig. S1
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Description An animation of 3D scatter plot of mean ration of unusable nodes.
Download mean ratio of unusable nodes.gif (10.49 Mb)
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Title Fig. S6
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Description An animation of 3D scatter plot of variance of ALW.
Download var ALW bdtree .gif (4.294 Mb)
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Title Fig. S8
Downloaded 8 times
Description An animation of 3D scatter plot of variance of EI.
Download var EI bdtree .gif (8.779 Mb)
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Title Fig S4
Downloaded 7 times
Description An animation of 3D scatter plot of variance of LD.
Download var LD bdtree .gif (4.447 Mb)
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Title Fig S2
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Description An animation of 3D scatter plot of variance of the ratio of unusable nodes.
Download var of unusable nodes.gif (7.406 Mb)
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When using this data, please cite the original publication:

Kubo T (2019) Biogeographical Network Analysis of Cretaceous Terrestrial Tetrapods: A Phylogeny-Based Approach. Systematic Biology. https://doi.org/10.1093/sysbio/syz024

Additionally, please cite the Dryad data package:

Kubo T (2019) Data from: Biogeographical network analysis of cretaceous terrestrial tetrapods: a phylogeny-based approach. Dryad Digital Repository. https://doi.org/10.5061/dryad.3q11m8g
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