Data from: Gradual evolution towards flightlessness in Steamer-Ducks

Campagna L, McCracken KG, Lovette IJ

Date Published: May 15, 2019

DOI: https://doi.org/10.5061/dryad.6n7v8r3

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Title Unfiltered SNP dataset
Downloaded 1 time
Description This file contains the output from the GATK GenotypeGVCFs module that has not undergone filtering. The samples are identified by sequencing library, but can be matched back to specimen using the README.txt file.
Download README.txt (1.532 Kb)
Download UNFILTERESD_SNP_SET_TACHYERES.vcf.gz (3.938 Gb)
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Title Filtered SNP dataset
Downloaded 2 times
Description This file contains the filtered set of SNPs used in the study. It was derived from the UNFILTERESD_SNP_SET_TACHYERES.vcf.gz file and individuals are identified in the same way as in that file.
Download second_filter_LOW_MISSING_TACHYERES.vcf.gz (64.82 Mb)
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Title Aligned mitochondrial genomes
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Download 56_mtgenomes.nex (979.9 Kb)
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Title Files for GPhoCS analysis
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Description These files are the input and control (.ctl) files used to conduct the GPhoCS analysis
Download combined_nomaf_1k.fasta (54.45 Mb)
Download README.ctl (2.349 Kb)
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Title Files for Structure analysis (all species together)
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Description This file was used to generate the Structure plot in Figures 2 and S3
Download 30miss_thin_50kb.str (4.072 Mb)
Download README.txt (936 bytes)
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When using this data, please cite the original publication:

Campagna L, McCracken KG, Lovette IJ (2019) Gradual evolution towards flightlessness in Steamer‐Ducks. Evolution. https://doi.org/10.1111/evo.13758

Additionally, please cite the Dryad data package:

Campagna L, McCracken KG, Lovette IJ (2019) Data from: Gradual evolution towards flightlessness in Steamer-Ducks. Dryad Digital Repository. https://doi.org/10.5061/dryad.6n7v8r3
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