Data from: Ecology of sleeping: the microbial and arthropod associates of chimpanzee beds

Thoemmes MS, Stewart FA, Hernandez-Aguilar RA, Bertone MA, Baltzegar DA, Borski RJ, Cohen N, Coyle KP, Piel AK, Dunn RR

Date Published: April 16, 2018

DOI: https://doi.org/10.5061/dryad.7cp50

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Title SleepEcology_MappingFile
Downloaded 2 times
Description Data mapping file.
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Title SleepEcology_seqs.fastq
Downloaded 2 times
Description Raw data file. Microbes were collected in relation to 41 chimpanzee beds located in the Issa Valley, western Tanzania, between August 2013 and April 2014. All samples were collected with dual-tipped sterile BBL Culture Swabs, and DNA was subsequently extracted with a MO BIO PowerSoil DNA Isolation Kit. Extracted DNA was sequenced on the Illumina MiSeq platform, targeting the V1-V2 region of the 16S rRNA gene.
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Title SleepEcology_OTU_rar_V2
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Description Rarefied dataset used in analyses. Sequences were rarefied to 5600 reads per sample.
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Title SleepEcology_Code
Downloaded 2 times
Description Workflow used to process raw data files in the UPARSE pipeline and analyze sequencing output within the R environment.
Download SleepEcology_Code_2.txt (14.19 Kb)
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When using this data, please cite the original publication:

Thoemmes MS, Stewart FA, Hernandez-Aguilar RA, Bertone MA, Baltzegar DA, Borski RJ, Cohen N, Coyle KP, Piel AK, Dunn RR (2018): Ecology of sleeping: the microbial and arthropod associates of chimpanzee beds. Royal Society Open Science 5(5): 180382. https://doi.org/10.1098/rsos.180382

Additionally, please cite the Dryad data package:

Thoemmes MS, Stewart FA, Hernandez-Aguilar RA, Bertone MA, Baltzegar DA, Borski RJ, Cohen N, Coyle KP, Piel AK, Dunn RR (2018) Data from: Ecology of sleeping: the microbial and arthropod associates of chimpanzee beds. Dryad Digital Repository. https://doi.org/10.5061/dryad.7cp50
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