Data from: The origin and evolution of coral species richness in a marine biodiversity hotspot

Huang D, Goldberg EE, Chou LM, Roy K

Date Published: November 15, 2017

DOI: https://doi.org/10.5061/dryad.8395f

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Title Species
Downloaded 14 times
Description List of all scleractinian corals showing reef species, geographic states according to Hughes et al. (2013) and Veron et al. (2009, 2011) (0 = widespread, 1 = endemic to CT, 2 = outside of CT), as well as GenBank and morphological data sources used to reconstruct the phylogeny of Scleractinia (doi:10.1098/rstb.2014.0010) and Acroporidae.
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Title RSTBtree
Downloaded 10 times
Description 1000 posterior trees of Scleractinia based on random resolutions of the supertree (doi:10.1098/rstb.2014.0010); used for GeoSSE analyses.
Download RSTBtree.tre (63.38 Mb)
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Title Acroporidae input
Downloaded 11 times
Description BEAST input file used to generate the Acroporidae molecular trees.
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Title Acroporidae trees
Downloaded 13 times
Description 1000 posterior trees of Acroporidae based on molecular data only; used for GeoSSE analyses.
Download Acroporidae.tre (4.668 Mb)
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Title GeoSSE
Downloaded 63 times
Description R code used to fit GeoSSE model using maximum likelihood and Bayesian Markov chain Monte Carlo.
Download GeoSSE.R (23.38 Kb)
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Title patch_diversitree
Downloaded 13 times
Description R code containing patch for the package "diversitree" to use hidden states.
Download patch_diversitree.R (4.255 Kb)
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When using this data, please cite the original publication:

Huang D, Goldberg EE, Chou LM, Roy K (2018) The origin and evolution of coral species richness in a marine biodiversity hotspot*. Evolution 72(2): 288-302. https://doi.org/10.1111/evo.13402

Additionally, please cite the Dryad data package:

Huang D, Goldberg EE, Chou LM, Roy K (2017) Data from: The origin and evolution of coral species richness in a marine biodiversity hotspot. Dryad Digital Repository. https://doi.org/10.5061/dryad.8395f
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