Data from: Reciprocal changes of H3K27ac and H3K27me3 at the promoter regions of the critical genes for endometrial decidualization

Katoh N, Kuroda K, Tomikawa J, Ogata-Kawata H, Ozaki R, Ochiai A, Kitade M, Takeda S, Nakabayashi K, Hata K

Date Published: September 14, 2018

DOI: https://doi.org/10.5061/dryad.97s68c2

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Title Tables for fpkm values
Downloaded 3 times
Description Tables for fpkm values for RNA-seq data calculated using Cufflinks:genes.fpkm_tracking, isoforms.fpkm_tracking, and tss_groups.fpkm_tracking
Download fpkm_tracking.zip (11.96 Mb)
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Title Peak call files for ChIP-seq data
Downloaded 1 time
Description Peak call files for CHIP-seq data produced by MACS2:EM0409D0_K27ac_macs2_peaks.narrowPeak EM0409D0_K27me3_macs2_peaks.broadPeak EM0409D0_K9me3_macs2_peaks.broadPeak EM0409D4_K27ac_macs2_peaks.narrowPeak EM0409D4_K27me3_macs2_peaks.broadPeak EM0409D4_K9me3_macs2_peaks.broadPeak EM0409D8_K27ac_macs2_peaks.narrowPeak EM0409D8_K27me3_macs2_peaks.broadPeak EM0409D8_K9me3_macs2_peaks.broadPeak EM0519D0_K27ac_macs2_peaks.narrowPeak EM0519D0_K27me3_macs2_peaks.broadPeak EM0519D0_K9me3_macs2_peaks.broadPeak EM0519D4_K27ac_macs2_peaks.narrowPeak EM0519D4_K27me3_macs2_peaks.broadPeak EM0519D4_K9me3_macs2_peaks.broadPeak EM0519D8_K27ac_macs2_peaks.narrowPeak EM0519D8_K27me3_macs2_peaks.broadPeak EM0519D8_K9me3_macs2_peaks.broadPeak
Download macs2.peakcalls.zip (62.99 Mb)
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Title bigwig_files
Downloaded 1 time
Description "bigwig_files.zip" (md5 checksum: a7cee3f55c6c3d53dd562475aa7fc1f3). The "bigwig_files.zip" file contains the following 25 bigwig files (19 files for ChIP-seq data and 6 files for RNA-sea data). EM0409_D0_H3K27ac.hg19.bw EM0409_D0_H3K27me3.hg19.bw EM0409_D0_H3K9me3.hg19.bw EM0409_D4_H3K27ac.hg19.bw EM0409_D4_H3K27me3.hg19.bw EM0409_D4_H3K9me3.hg19.bw EM0409_D4_input.hg19.bw EM0409_D8_H3K27ac.hg19.bw EM0409_D8_H3K27me3.hg19.bw EM0409_D8_H3K9me3.hg19.bw EM0519_D0_H3K27ac.hg19.bw EM0519_D0_H3K27me3.hg19.bw EM0519_D0_H3K9me3.hg19.bw EM0519_D4_H3K27ac.hg19.bw EM0519_D4_H3K27me3.hg19.bw EM0519_D4_H3K9me3.hg19.bw EM0519_D4_input.hg19.bw EM0519_D8_H3K27me3.hg19.bw EM0519_D8_H3K9me3.hg19.bw RNAseq_EM0409_D0.hg19.bw RNAseq_EM0409_D4.hg19.bw RNAseq_EM0409_D8.hg19.bw RNAseq_EM0519_D0.hg19.bw RNAseq_EM0519_D4.hg19.bw RNAseq_EM0519_D8.hg19.bw
Download bigwig_files.zip (6.597 Gb)
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When using this data, please cite the original publication:

Katoh N, Kuroda K, Tomikawa J, Ogata-Kawata H, Ozaki R, Ochiai A, Kitade M, Takeda S, Nakabayashi K, Hata K (2018) Reciprocal changes of H3K27ac and H3K27me3 at the promoter regions of the critical genes for endometrial decidualization. Epigenomics, online in advance of print. https://doi.org/10.2217/epi-2018-0006

Additionally, please cite the Dryad data package:

Katoh N, Kuroda K, Tomikawa J, Ogata-Kawata H, Ozaki R, Ochiai A, Kitade M, Takeda S, Nakabayashi K, Hata K (2018) Data from: Reciprocal changes of H3K27ac and H3K27me3 at the promoter regions of the critical genes for endometrial decidualization. Dryad Digital Repository. https://doi.org/10.5061/dryad.97s68c2
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