Data from: The interplay of past diversification and evolutionary isolation with present imperilment across the amphibian tree of life

Jetz W, Pyron RA

Date Published: March 26, 2018

DOI: https://doi.org/10.5061/dryad.cc3n6j5

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Title amph_shl_new_Backbone
Downloaded 34 times
Description Species chosen from the 4,061-species matrix for representation in the 175-species backbone tree.
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Title amph_shl_new_Classification
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Description Classification of 7,238 amphibian species, indication of data presence/absence, and dimensions of available sequence data.
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Title amph_shl_new_Consensus_7238
Downloaded 74 times
Description Consensus of 10,000 fully-sampled trees from the posterior, containing both data species (4,061) and imputed taxa (3,177).
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Title amph_shl_new_GenBank
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Description GenBank accession numbers for the 4,061 species in the 15-gene matrix.
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Title amph_shl_new.ED.1000
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Description ED values for 7,238 species calculated from 1,000 randomly sampled trees from the posterior.
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Title amph_shl_new
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Description Best-fit evolutionary models for the 15-gene, 4,061-species alignment.
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Title amph_shl_new.phy
Downloaded 19 times
Description The 15-gene, 4,061-species alignment, zipped.
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Title amph_shl_new
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Description The NNI-optimized ML phylogeny containing 4,061 species, from 15-gene alignment, with SHL support values.
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Title Supplemental_Figures_S1-12
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Description Supplementary Figures S1-12
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Title Global_Ecoregion_Assignments
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Description Assignment of 7238 amphibian species to 12 global ecoregions. Some species are listed two or three times, as they occur in multiple ecoregions, for a total of 7474 entries.
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Title Amphibian_ED_Threat_EDGE_Isaac
Downloaded 14 times
Description Primary results from the phylogenetic analyses, including the ED score of all 7,238 species, the upper and lower 2.5% range of ED scores per species, the threat status of each species, its EDGE score, and the ED and EDGE scores reported for 4,307 species by Isaac et al.
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Title amph_shl_new_Posterior_7238.1000.trees
Downloaded 34 times
Description First 1000 taxonomically complete, dated trees, containing 7,238 amphibian species.
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Title amph_shl_new_Posterior_7238.2000.trees
Downloaded 20 times
Description Second 1000 taxonomically complete, dated trees, containing 7,238 amphibian species.
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Title amph_shl_new_Posterior_7238.3000.trees
Downloaded 19 times
Description Third 1000 taxonomically complete, dated trees, containing 7,238 amphibian species.
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Title amph_shl_new_Posterior_7238.4000.trees
Downloaded 20 times
Description Fourth 1000 taxonomically complete, dated trees, containing 7,238 amphibian species.
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Title amph_shl_new_Posterior_7238.5000.trees
Downloaded 21 times
Description Fifth 1000 taxonomically complete, dated trees, containing 7,238 amphibian species.
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Title amph_shl_new_Posterior_7238.6000.trees
Downloaded 20 times
Description Sixth 1000 taxonomically complete, dated trees, containing 7,238 amphibian species.
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Title amph_shl_new_Posterior_7238.7000.trees
Downloaded 18 times
Description Seventh 1000 taxonomically complete, dated trees, containing 7,238 amphibian species.
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Title amph_shl_new_Posterior_7238.8000.trees
Downloaded 18 times
Description Eighth 1000 taxonomically complete, dated trees, containing 7,238 amphibian species.
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Title amph_shl_new_Posterior_7238.9000.trees
Downloaded 17 times
Description Ninth 1000 taxonomically complete, dated trees, containing 7,238 amphibian species.
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Title amph_shl_new_Posterior_7238.10000.trees
Downloaded 22 times
Description Tenth 1000 taxonomically complete, dated trees, containing 7,238 amphibian species.
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When using this data, please cite the original publication:

Jetz W, Pyron RA (2018) The interplay of past diversification and evolutionary isolation with present imperilment across the amphibian tree of life. Nature Ecology & Evolution 2(5): 850-858. https://doi.org/10.1038/s41559-018-0515-5

Additionally, please cite the Dryad data package:

Jetz W, Pyron RA (2018) Data from: The interplay of past diversification and evolutionary isolation with present imperilment across the amphibian tree of life. Dryad Digital Repository. https://doi.org/10.5061/dryad.cc3n6j5
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