Data from: Quantifying the importance of geographic replication and representativeness when estimating demographic rates, using a coastal species as a case study

Field CR, Ruskin KJ, Benvenuti B, Borowske AC, Cohen JB, Garey L, Hodgman TP, Kern RA, King E, Kocek AR, Kovach AI, O'Brien KM, Olsen BJ, Pau N, Roberts SG, Shelly E, Shriver WG, Walsh J, Elphick CS

Date Published: July 14, 2017

DOI: https://doi.org/10.5061/dryad.f5c50

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Title Mark_recapture_matrix
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Description "Mark_recapture_matrix.csv": A file containing capture records for each individual (by row) for each year of the study (1 is captured in a given year; 0 is not captured). Covariates used in the analysis of annual survival are also provided: Species ID (1 for Ammodramus caudacutus, 0 for Ammodramus nelsoni, NA for unknown species identity), Sex (1 is male), First capture (the date of first capture; 1 is 2010, 2 is 2011, etc.), Site (1-21), and Plot size (standardized by subtracting the mean and dividing by two standard deviations).
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Title brood_size_MCMC
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Description "brood_size_MCMC.csv": A file containing the posterior estimates of the parameters from a regression of brood size (at fledging) by clutch size. Rows are 1000 draws from the posterior distributions for the regression intercept (intercept) and the effect of clutch size (clutch).
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Title nest_failure_MCMC
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Description "nest_failure_MCMC.csv": A file containing the posterior estimates of the parameters from a regression of daily nest failure probability by site and date. Rows are 1000 draws from the posterior distributions for each site effect (site[1] through site[21]) and site-specific coefficient for the date effect (one coefficient for each site; date[1] through date[21]).
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Title renest_prob_MCMC
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Description "renest_prob_MCMC.csv": A file containing the posterior estimates of the parameters from a regression of re-nesting probability by latitude and date. Rows are 1000 draws from the posterior distributions for each coefficient: intercept (intercept of the regression equation), latitude (the effect of latitude on renesting probability), and date (the effect of date on renesting probability).
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Title annual_survival_MCMC
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Description "annual_survival_MCMC.csv": A file containing posterior estimates of adult annual survival, by site (columns). Rows are 1000 draws from the posterior distributions for the log-odds of survival (survival estimates are back-transformed using the inverse logit in the model code in order to take a value between 0 and 1). Sites are identified by a two-letter code and are provided from low to high latitude.
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When using this data, please cite the original publication:

Field CR, Ruskin KJ, Benvenuti B, Borowske AC, Cohen JB, Garey L, Hodgman TP, Kern RA, King E, Kocek AR, Kovach AI, O'Brien KM, Olsen BJ, Pau N, Roberts SG, Shelly E, Shriver WG, Walsh J, Elphick CS (2017) Quantifying the importance of geographic replication and representativeness when estimating demographic rates, using a coastal species as a case study. Ecography 41(6): 971-981. https://doi.org/10.1111/ecog.02424

Additionally, please cite the Dryad data package:

Field CR, Ruskin KJ, Benvenuti B, Borowske AC, Cohen JB, Garey L, Hodgman TP, Kern RA, King E, Kocek AR, Kovach AI, O'Brien KM, Olsen BJ, Pau N, Roberts SG, Shelly E, Shriver WG, Walsh J, Elphick CS (2017) Data from: Quantifying the importance of geographic replication and representativeness when estimating demographic rates, using a coastal species as a case study. Dryad Digital Repository. https://doi.org/10.5061/dryad.f5c50
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