Data from: Mutations in bacterial genes induce unanticipated changes in the relationship between bacterial pathogens in experimental otitis media

Lakhani V, Li T, Mukherjee S, Stewart WCL, Sword WE, Das J

Date Published: November 8, 2018

DOI: https://doi.org/10.5061/dryad.j89d064

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Title in vivo RawData
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Description Contains the data for bacterial counts in individual chinchilla ears
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Title MATLAB code used for analysis
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Description Set22A.mat This set of data provides the mapping from discretized alpha-space to a discretized N-space, as well as all the necessary information used to generate this particular mapping. This mapping was used throughout the data analysis in this manuscript (except as noted in Fig S5). Qa2Xmap – This matrix variable has 17,645,368 rows and 6 columns. This matrix is a map from alpha-space to N-space. For a given row, the first four columns are the alpha-matrix values {a11, a12, a21, a22}; the last two columns indicate the corresponding steady state N-values (in 106 CFU) {NTHi, Mcat}. See Eqn 3 in Methods B.1. X1, X2 – This column vector has the discretized values of N1, and N2 respectively (in 106 CFU). a11, a12, a21, a22 – These column vectors have the discretized values of a11, a12, a21, and a22 respectively. X1range, X2range – These variables contain the minimum and maximum of N1, and N2 respectively. Xbns – N1, and N2 were each discretized into this many number of bins. abns_diag – a11, and a22 were each discretized into this many number of bins. abns_offdiag – a12, and a21 were each discretized into this many number of bins. counts – this square matrix records the number of alpha matrices that correspond to steady state values in each bin of N-space. kappa – this square matrix is equal to “counts” / 17,645,368.
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When using this data, please cite the original publication:

Lakhani V, Tan L, Mukherjee S, Stewart WCL, Swords WE, Das J (2018) Mutations in bacterial genes induce unanticipated changes in the relationship between bacterial pathogens in experimental otitis media. Royal Society Open Science 5(11): 180810. https://doi.org/10.1098/rsos.180810

Additionally, please cite the Dryad data package:

Lakhani V, Li T, Mukherjee S, Stewart WCL, Sword WE, Das J (2018) Data from: Mutations in bacterial genes induce unanticipated changes in the relationship between bacterial pathogens in experimental otitis media. Dryad Digital Repository. https://doi.org/10.5061/dryad.j89d064
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