Data from: The tomato pan-genome uncovers new genes and a rare allele regulating fruit flavor

Gao L, Gonda I, Sun H, Ma Q, Bao K, Tieman DM, Burzynski-Chang EA, Fish TL, Stromberg KA, Sacks GL, Thannhauser TW, Foolad MR, Diez MJ, Canizares J, Xu Y, van der Knaap E, Huang S, Klee HJ, Giovannoni JJ, Fei Z

Date Published: May 14, 2019

DOI: https://doi.org/10.5061/dryad.m463f7k

Files in this package

Content in the Dryad Digital Repository is offered "as is." By downloading files, you agree to the Dryad Terms of Service. To the extent possible under law, the authors have waived all copyright and related or neighboring rights to this data. CC0 (opens a new window) Open Data (opens a new window)

Title SNPs called from the RNA-Seq data of RILs
Downloaded 15 times
Description SNPs called from the RNA-Seq data of RILs and their two parents, S. lycopersicum breeding line NC EBR-1 and S. pimpinellifolium accession LA2093. The file is in vcf format.
Download RIL_SNPs.vcf.gz (20.75 Mb)
Details View File Details
Title Tomato non-reference genome sequences
Downloaded 35 times
Description Non-reference genome sequences of tomato pan-genome
Download Tomato_NonRef.fa.gz (108.4 Mb)
Details View File Details
Title gene models in non-reference genome
Downloaded 28 times
Description gene models annotated in the non-reference sequences of the tomato pan-genome, in gff3 format
Download Tomato_NonRef.gff.gz (715.7 Kb)
Details View File Details

When using this data, please cite the original publication:

Gao L, Gonda I, Sun H, Ma Q, Bao K, Tieman DM, Burzynski-Chang EA, Fish TL, Stromberg KA, Sacks GL, Thannhauser TW, Foolad MR, Diez MJ, Blanca J, Canizares J, Xu Y, van der Knaap E, Huang S, Klee HJ, Giovannoni JJ, Fei Z (2019) The tomato pan-genome uncovers new genes and a rare allele regulating fruit flavor. Nature Genetics. https://doi.org/10.1038/s41588-019-0410-2

Additionally, please cite the Dryad data package:

Gao L, Gonda I, Sun H, Ma Q, Bao K, Tieman DM, Burzynski-Chang EA, Fish TL, Stromberg KA, Sacks GL, Thannhauser TW, Foolad MR, Diez MJ, Canizares J, Xu Y, van der Knaap E, Huang S, Klee HJ, Giovannoni JJ, Fei Z (2019) Data from: The tomato pan-genome uncovers new genes and a rare allele regulating fruit flavor. Dryad Digital Repository. https://doi.org/10.5061/dryad.m463f7k
Cite | Share
Download the data package citation in the following formats:
   RIS (compatible with EndNote, Reference Manager, ProCite, RefWorks)
   BibTex (compatible with BibDesk, LaTeX)

Search for data

Be part of Dryad

We encourage organizations to: