Data from: The comparative biogeography of Philippine geckos challenges predictions from a paradigm of climate-driven vicariant diversification across an island archipelago

Oaks JR, Siler CD, Brown RM

Date Published: April 17, 2019

DOI: https://doi.org/10.5061/dryad.n34d4m7

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Title Project repository
Description An archived version of the project git repository. The archive is in Zenodo; the original repository is hosted on GitHub.
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Title NCBI BioProject
Description This NCBI BioProject includes the raw (demultiplexed) sequence reads that were used in the paper.
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Title Supplemental Table 1
Downloaded 6 times
Description The data for all samples included in the three RADseq libraries.
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Title Supplemental Table 2
Downloaded 3 times
Description The data for all samples included in the 16 pairs of populations analyzed in this study. This is a subset of the data in Supplemental Table 1.
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Title Animation from Supplemental Figure 2
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Description Animation of approximate sea-level changes in the Philippine Islands over the last 430,000 years. Sea-level estimates are from the projection of Spratt and Lisiecki (2016) based on seven reconstructions. Bathymetry data are from the ETOPO1 1-arc-minute global relief model (Amante and Eakins, 2009). Animation generated using marmap version 1.0.2 (Pante and Simon-Bouhet, 2013), ggplot2 Version 2.2.1 (Wickham, 2009), ImageMagick Version 6.9.10-8 Q16 x86_64 20180723, and FFmpeg Version 4.0.2-2. The source code for generating the plot is available at https://github.com/phyletica/animating-sea-level-change. This animation can also be viewed at https://youtu.be/NjGdCezUvw8.
Download animated-bathymetry.mp4 (4.515 Mb)
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When using this data, please cite the original publication:

Oaks JR, Siler CD, Brown RM (2019) The comparative biogeography of Philippine geckos challenges predictions from a paradigm of climate‐driven vicariant diversification across an island archipelago. Evolution. https://doi.org/10.1111/evo.13754

Additionally, please cite the Dryad data package:

Oaks JR, Siler CD, Brown RM (2019) Data from: The comparative biogeography of Philippine geckos challenges predictions from a paradigm of climate-driven vicariant diversification across an island archipelago. Dryad Digital Repository. https://doi.org/10.5061/dryad.n34d4m7
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