Data from: SPIKEPIPE: a metagenomic pipeline for the accurate quantification of eukaryotic species occurrences and intraspecific abundance change using DNA barcodes or mitogenomes

Ji Y, Huotari T, Roslin T, Schmidt NM, Wang J, Yu DW, Ovaskainen O

Date Published: August 13, 2019

DOI: https://doi.org/10.5061/dryad.r105t1f

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Title ArcDyn_tutorial_20190126.tar.gz
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Description Text S6. How to run Step 4 (bioinformatics) of the SPIKEPIPE pipeline. Here we describe how to the user may apply SPIKEPIPE pipeline to a subset of the data used in this paper, henceforth called ArcDyn tutorial. To install the ArcDyn tutorial, download and untar the 4.9 GB tutorial file (ArcDyn_tutorial_20190126.tar.gz) to the root directory.
Download ArcDyn_tutorial_20190126.tar.gz (4.890 Gb)
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When using this data, please cite the original publication:

Ji Y, Huotari T, Roslin T, Schmidt NM, Wang J, Yu DW, Ovaskainen O (2019) SPIKEPIPE: A metagenomic pipeline for the accurate quantification of eukaryotic species occurrences and intraspecific abundance change using DNA barcodes or mitogenomes. Molecular Ecology Resources, online in advance of print. https://doi.org/10.1111/1755-0998.13057

Additionally, please cite the Dryad data package:

Ji Y, Huotari T, Roslin T, Schmidt NM, Wang J, Yu DW, Ovaskainen O (2019) Data from: SPIKEPIPE: a metagenomic pipeline for the accurate quantification of eukaryotic species occurrences and intraspecific abundance change using DNA barcodes or mitogenomes. Dryad Digital Repository. https://doi.org/10.5061/dryad.r105t1f
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