Data from: Testing an hypothesis of hybrid zone movement for toads in France

van Riemsdijk I, Butlin RK, Wielstra B, Arntzen JW

Date Published: January 10, 2019

DOI: https://doi.org/10.5061/dryad.rg18034

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Title 01_Distance
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Description Distance calculations populations transect
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Title 02_SNP_design_transcriptome
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Description Script, in-, and output for SNP design based on transcriptome data. Some large files are stored in the main directory
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Title 02_Step1_01_README_Raw_data_Bufo
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Title 02_Step1_02_Filtered_data
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Description Scripts, in-, and output for transcriptome data filtering. Some of the large files are in the main directory.
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Title 02_Step1_02_README_filtered_data
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Title 02_Step1_03_Assembled_data
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Description Scripts, in-, and output for the assembled transcriptome data
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Title 03_Genepop_HW_LD
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Description Script, in-, and output for Hardy Weinberg and pairwise linkage disequilibrium calculations with Genepop in R
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Title 04_Structure
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Description Structure in-, and output and R scripts to generate the figures in the main text and supplements
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Title 05_Admixture_LD
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Description Scripts, in-, and output for admixture linkage disequilibrium calculations following Barton & Gale 1993
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Title 06_HZAR
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Description Scripts, in-, and output files for HZAR analyses.
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Title 07_HIest
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Description Script, in-, and output for HIest
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Title filtered_bufo_forward_paired
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Title filtered_bufo_reverse_paired
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Title filtered_spinosus_forward_paired
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Title filtered_spinosus_reverse_paired
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Title filtered_ZFG-15-11_1_13136_AGTCAA_L001_R1_001
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Title filtered_ZFG-15-11_1_13136_AGTCAA_L001_R2_001
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Title filtered_ZFG-15-11_13_13148_GTCCGC_L001_R1_001
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Title filtered_ZFG-15-11_13_13148_GTCCGC_L001_R2_001
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When using this data, please cite the original publication:

van Riemsdijk I, Butlin RK, Wielstra B, Arntzen JW (2019) Testing an hypothesis of hybrid zone movement for toads in France. Molecular Ecology, online in advance of print. https://doi.org/10.1111/mec.15005

Additionally, please cite the Dryad data package:

van Riemsdijk I, Butlin RK, Wielstra B, Arntzen JW (2019) Data from: Testing an hypothesis of hybrid zone movement for toads in France. Dryad Digital Repository. https://doi.org/10.5061/dryad.rg18034
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