Data from: Discovery of potential urine-accessible metabolite biomarkers associated with muscle disease and corticosteroid response in the mdx mouse model for Duchenne

Thangarajh M, Zhang A, Gill K, Ressom HW, Li Z, Varghese RS, Hoffman EP, Nagaraju K, Hathout Y, Boca SM

Date Published: August 9, 2019

DOI: https://doi.org/10.5061/dryad.v42h23k

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Title R code to process files with XCMS
Downloaded 5 times
Description Code to process CDF files in NEG and POS directories
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Title R code using CAMERA to annotate XCMS results
Downloaded 3 times
Description Run this code after 0.process_with_XCMS.R
Download 0_1.process_CAMERA.R (1.442 Kb)
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Title Sample annotations for the CDF files in POS and NEG directories
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Download Sample Annotation_Urine Samples.xlsx (19.70 Kb)
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Title CDF files for the negative mode
Downloaded 6 times
Description CDF files for the LC-MS analysis, for the negative mode, described in Sample Annotation_Urine Samples.xlsx, which are processed by running the code in 0.process_with_XCMS.R, followed by 0_1.process_CAMERA.R.
Download README.txt (47 bytes)
Download NEG.7z (3.965 Gb)
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Title CDF files for the positive mode
Downloaded 7 times
Description CDF files for the LC-MS analysis, for the positive mode, described in Sample Annotation_Urine Samples.xlsx, which are processed by running the code in 0.process_with_XCMS.R, followed by 0_1.process_CAMERA.R.
Download README.txt (47 bytes)
Download POS.7z (7.936 Gb)
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Title Raw data from LC-MS/MS validation experiments
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Description Zipped directory containing the raw data from the LC-MS/MS validations, with the samples described in sample annotation.xlsx.
Download Validations.7z (1.525 Gb)
Download README.txt (47 bytes)
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When using this data, please cite the original publication:

Thangarajh M, Zhang A, Gill K, Ressom HW, Li Z, Varghese RS, Hoffman EP, Nagaraju K, Hathout Y, Boca SM (2019) Discovery of potential urine-accessible metabolite biomarkers associated with muscle disease and corticosteroid response in the mdx mouse model for Duchenne. PLOS ONE 14(7): e0219507. https://doi.org/10.1371/journal.pone.0219507

Additionally, please cite the Dryad data package:

Thangarajh M, Zhang A, Gill K, Ressom HW, Li Z, Varghese RS, Hoffman EP, Nagaraju K, Hathout Y, Boca SM (2019) Data from: Discovery of potential urine-accessible metabolite biomarkers associated with muscle disease and corticosteroid response in the mdx mouse model for Duchenne. Dryad Digital Repository. https://doi.org/10.5061/dryad.v42h23k
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