Landmark Data
TPS file containing landmark data
Chapter 1_Disparity Data.TPS
Phylogenetic Tree
A nexus file containing the phylogenetic tree used in the phylogenetic comparative methods.
Chapter 1_trees_final.nexus
Principal Component scores
Principal Component scores used to construct the morphospace and also used in the mvMORPH analysis.
Chapter 1_data_all PCs.csv
PhylogeneticEM data
Data used for PhylogeneticEM analysis
Chapter 1_PhylogeneticEM_data.csv
Conevol script
Script used to run Conevol analysis in R
Chapter 1_Conevol.txt
MVmorph script
Script used to perform MVmorph analysis in R
Chapter 1_MVmorph.txt
MVmorph_uncertainty script
Script used to perform MVmorph analysis while accounting for uncertainty in the trophic ecology
Chapter 1_MVmorph_uncertainty code.txt
PhylogeneticEM script
Script used to perform PhylogeneticEM analysis in R
Chapter 1_PhylogeneticEM.R
Surface script
Script used to perform SURFACE analysis in R
Chapter 1_Phylomorpospace and Surface.txt
Co-occurrence script
Calculate the probability of at least c of m shifts in morphological regime falling on the same branches of a phylogeny as e shifts in ecology
Co-occurrence.R
