Feather growth rate and hormone deposition vary with elevation but not reproductive costs in resident Mountain Chickadees
Data files
Mar 08, 2024 version files 34.71 KB
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AdultFeather_data_030724.csv
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MOCH_BreedingMaster_030724.csv
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README.md
Abstract
Many organisms engage in metabolic tradeoffs to manage costs associated with reproductive output which often leads to these costs carrying over into the future. Compensatory mechanisms vary across life history strategies and are expected to result in near optimal fitness gains for the investor. Here we investigated whether environmental differences associated with increasing montane elevation and variation in reproductive output of a resident passerine songbird, the Mountain Chickadee (Poecile gambeli), were related to physiological condition during annual molt. Higher elevations are associated with harsher environmental conditions during the winter, which results in later and shorter breeding seasons than at lower elevations. We sampled the outermost tail feathers from adult birds in the fall after their prebasic molt, which initiates closely after reproduction (e.g., after parental care has ceased, ~1-3 weeks). We measured the hormone corticosterone deposited in feathers (fCORT) and feather growth rates for evidence of physiological effort predicted to be driven by several units of reproductive output (e.g., breeding timing, clutch and brood size, offspring mass). There were no relationships between any measure of reproductive output and feather characteristics between elevations or across years, despite substantial variation in reproductive output in the wider population across this same time. However, birds at the high elevation site grew their tail feathers significantly faster and had higher fCORT deposition compared to low elevation birds. These results suggest that although differences in reproductive output and any related signals of associated physiological effort (e.g., fCORT and feather growth rate) may not extend into individual condition during annual molt, shorter breeding seasons associated with harsher environmental conditions may favor faster feather growth as required by earlier onset of winter.
README: Feather growth rate and hormone deposition vary with elevation but not reproductive costs in resident Mountain Chickadees
https://doi.org/10.5061/dryad.4f4qrfjkz
This dataset contains three main files. The first two are .CSV files that contain the raw data of the study and the data used in all the analyses. The 3rd file is a .R file that contains all of the analysis code, variable descriptions, and any minor data transformations.
1. AdultFeather_data_030724.csv
2. MOCH_BreedingMaster_030724.csv
3. Adult_feather_analysis_083023.R
File 1: Variable Descriptions for File 1: AdultFeather_data_030724.csv
- B_ID: individual identifier of sampled bird
- Year: the year in which a sample belongs
- Elevation: site location; H is for high elevation and L is for low elevation
- Breeder: whether the bird was recorded breeding; all NA's are individuals with sampled feathers
- Sex: male, female, or null (if sex unknown) designation
- Wing.Length: the length of the wing taken when the bird was banded (mm)
- Cort_pg: total Corticosterone in a sample
- Cort_mm: total corticosterone divided by total length of the feather
- TotalAverage: the mean length (mm) of feather growth bars
- Total_length: total feather length (mm)
- LengthWoutCal: total feather length minus calamus length (mm)
- Total_mass: total feather mass (mg)
- MassWoutCal: total feather mass minus calamus mass (mg)
- J.FIRST.EGG: the julian date of when a first egg was laid
- CLUTCH: the number of eggs within a nest
- BROOD: the number of nestlings sampled at Day16 posthatch
- MEANMASS: the mean mass of nestlings within a nest sampled at Day16 posthatch (grams)
- CV: the coefficient of variation of nestling mass within a nest sampled at Day16 posthatch
File 2: Variable Descriptions for File 2: MOCH_BreedingMaster_030724.csv
- YEAR: the year in which a sample belongs
- ELEVATION: site location; H is for high elevation and L is for low elevation
- M.ID: identification of male at the nest
- F.ID: identification of female at the nest
- J.FIRST.EGG: the julian date of when a first egg was laid
- CLUTCH: the number of eggs within a nest
- BROOD: the number of nestlings sampled at Day16 posthatch
- MEANMASS: the mean mass of nestlings within a nest sampled at Day16 posthatch (grams)
- CV: the coefficient of variation of nestling mass within a nest sampled at Day16 posthatch
File 3: Adult_feather_analysis_083023.R
The R packages used in the analysis include:
tidyverse - general data organization and wrangling
DHARMa - check model assumptions and fit
glmmTMB - used for mixed effects models in the analysis
emmeans - calculates post hoc estimates and values from main models
rcompanion - extracts summary statistics from main mixed effects models
Methods
This dataset was collected in a long term field system in the Sagehen Experimental Forest (Sagehen Creek Field Station, University of California, Berkelely) in the Sierra Nevada, USA during 2018-2021. The majority of the data is observational and was collected during the reproductive season of the animals monitored in the study (Mountain Chickadees, Poecile gambeli). This raw data was entered into ongoing database files and was not otherwise filtered or processed. The other subset of the data was collected in a wetlab environment using a standard ELISA. Raw hormone quantity values calculated from a standard curve were collected and corrected for feather size (both mass and length) but otherwise left unprocessed.