Optimal searching behaviour generated intrinsically by the central pattern generator for locomotion
Data files
Nov 04, 2019 version files 41.82 MB
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1_DROS_DEC2014_-_larva(0).nc
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1_DROS_DEC2014_-_larva(1).nc
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1_DROS_DEC2014_-_larva(2).nc
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1_DROS_DEC2014_-_larva(3).nc
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1_DROS_DEC2014_-_larva(374).nc
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1_DROS_DEC2014_-_larva(4).nc
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1_DROS_DEC2014_-_larva(425).nc
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1_DROS_DEC2014_-_larva(5).nc
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1_DROS_DEC2014_-_larva(537).nc
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1_DROS_DEC2014_-_larva(540).nc
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1_DROS_DEC2014_-_larva(542).nc
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1_DROS_DEC2014_-_larva(543).nc
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1_DROS_DEC2014_-_larva(544).nc
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1_DROS_DEC2014_-_larva(547).nc
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1_DROS_DEC2014_-_larva(548).nc
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1_DROS_DEC2014_-_larva(549).nc
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1_DROS_DEC2014_-_larva(550).nc
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1_DROS_DEC2014_-_larva(551).nc
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1_DROS_DEC2014_-_larva(552).nc
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1_DROS_DEC2014_-_larva(558).nc
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1_DROS_DEC2014_-_larva(563).nc
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1_DROS_DEC2014_-_larva(571).nc
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1_DROS_DEC2014_-_larva(578).nc
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1_DROS_DEC2014_-_larva(584).nc
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1_DROS_DEC2014_-_larva(591).nc
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1_DROS_DEC2014_-_larva(6).nc
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1_DROS_DEC2014_-_larva(7).nc
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1_DROS_DEC2014_-_larva(8).nc
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1_DROS_DEC2014_-_larva(9).nc
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15Hz_test_-_larva(0).nc
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15Hz_test_-_larva(1).nc
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15Hz_test_-_larva(10).nc
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15Hz_test_-_larva(11).nc
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15Hz_test_-_larva(2).nc
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15Hz_test_-_larva(3).nc
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15Hz_test_-_larva(4).nc
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15Hz_test_-_larva(5).nc
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15Hz_test_-_larva(6).nc
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15Hz_test_-_larva(7).nc
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15Hz_test_-_larva(8).nc
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15Hz_test_-_larva(9).nc
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1A_DROS_BL-__n2_-_larva(0).nc
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1A_DROS_BL-__n2_-_larva(1).nc
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1A_DROS_BL-__n2_-_larva(10).nc
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1A_DROS_BL-__n2_-_larva(11).nc
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1A_DROS_BL-__n2_-_larva(12).nc
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1A_DROS_BL-__n2_-_larva(13).nc
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1A_DROS_BL-__n2_-_larva(14).nc
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1A_DROS_BL-__n2_-_larva(17).nc
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1A_DROS_BL-__n2_-_larva(2).nc
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1A_DROS_BL-__n2_-_larva(20).nc
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1A_DROS_BL-__n2_-_larva(22).nc
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1A_DROS_BL-__n2_-_larva(23).nc
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1A_DROS_BL-__n2_-_larva(25).nc
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1A_DROS_BL-__n2_-_larva(26).nc
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1A_DROS_BL-__n2_-_larva(28).nc
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1A_DROS_BL-__n2_-_larva(29).nc
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1A_DROS_BL-__n2_-_larva(3).nc
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1A_DROS_BL-__n2_-_larva(30).nc
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1A_DROS_BL-__n2_-_larva(32).nc
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1A_DROS_BL-__n2_-_larva(33).nc
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1A_DROS_BL-__n2_-_larva(34).nc
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1A_DROS_BL-__n2_-_larva(35).nc
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1A_DROS_BL-__n2_-_larva(36).nc
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1A_DROS_BL-__n2_-_larva(37).nc
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1A_DROS_BL-__n2_-_larva(38).nc
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1A_DROS_BL-__n2_-_larva(39).nc
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1A_DROS_BL-__n2_-_larva(4).nc
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1A_DROS_BL-__n2_-_larva(40).nc
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1A_DROS_BL-__n2_-_larva(42).nc
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1A_DROS_BL-__n2_-_larva(43).nc
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1A_DROS_BL-__n2_-_larva(44).nc
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1A_DROS_BL-__n2_-_larva(45).nc
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1A_DROS_BL-__n2_-_larva(46).nc
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1A_DROS_BL-__n2_-_larva(47).nc
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1A_DROS_BL-__n2_-_larva(48).nc
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1A_DROS_BL-__n2_-_larva(5).nc
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1A_DROS_BL-__n2_-_larva(50).nc
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1A_DROS_BL-__n2_-_larva(51).nc
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1A_DROS_BL-__n2_-_larva(53).nc
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1A_DROS_BL-__n2_-_larva(54).nc
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1A_DROS_BL-__n2_-_larva(55).nc
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1A_DROS_BL-__n2_-_larva(56).nc
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1A_DROS_BL-__n2_-_larva(57).nc
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1A_DROS_BL-__n2_-_larva(58).nc
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1A_DROS_BL-__n2_-_larva(59).nc
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1A_DROS_BL-__n2_-_larva(6).nc
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1A_DROS_BL-__n2_-_larva(60).nc
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1A_DROS_BL-__n2_-_larva(61).nc
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1A_DROS_BL-__n2_-_larva(62).nc
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1A_DROS_BL-__n2_-_larva(64).nc
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1A_DROS_BL-__n2_-_larva(66).nc
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1A_DROS_BL-__n2_-_larva(67).nc
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1A_DROS_BL-__n2_-_larva(7).nc
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1A_DROS_BL-__n2_-_larva(8).nc
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1A_DROS_BL-__n2_-_larva(9).nc
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1B_DROS_BL-__n3_-_larva(0).nc
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1B_DROS_BL-__n3_-_larva(1).nc
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1B_DROS_BL-__n3_-_larva(10).nc
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1B_DROS_BL-__n3_-_larva(14).nc
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1B_DROS_BL-__n3_-_larva(17).nc
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1B_DROS_BL-__n3_-_larva(18).nc
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1B_DROS_BL-__n3_-_larva(19).nc
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1B_DROS_BL-__n3_-_larva(2).nc
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1B_DROS_BL-__n3_-_larva(21).nc
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1B_DROS_BL-__n3_-_larva(22).nc
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1B_DROS_BL-__n3_-_larva(23).nc
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1B_DROS_BL-__n3_-_larva(29).nc
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1B_DROS_BL-__n3_-_larva(3).nc
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1B_DROS_BL-__n3_-_larva(4).nc
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1B_DROS_BL-__n3_-_larva(44).nc
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1B_DROS_BL-__n3_-_larva(45).nc
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1B_DROS_BL-__n3_-_larva(47).nc
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1B_DROS_BL-__n3_-_larva(49).nc
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1B_DROS_BL-__n3_-_larva(5).nc
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1B_DROS_BL-__n3_-_larva(52).nc
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1B_DROS_BL-__n3_-_larva(53).nc
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1B_DROS_BL-__n3_-_larva(55).nc
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1B_DROS_BL-__n3_-_larva(56).nc
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1B_DROS_BL-__n3_-_larva(57).nc
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1B_DROS_BL-__n3_-_larva(58).nc
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1B_DROS_BL-__n3_-_larva(59).nc
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1B_DROS_BL-__n3_-_larva(6).nc
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1B_DROS_BL-__n3_-_larva(60).nc
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1B_DROS_BL-__n3_-_larva(61).nc
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1B_DROS_BL-__n3_-_larva(62).nc
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1B_DROS_BL-__n3_-_larva(63).nc
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1B_DROS_BL-__n3_-_larva(64).nc
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1B_DROS_BL-__n3_-_larva(65).nc
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1B_DROS_BL-__n3_-_larva(66).nc
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1B_DROS_BL-__n3_-_larva(67).nc
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1B_DROS_BL-__n3_-_larva(68).nc
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1B_DROS_BL-__n3_-_larva(69).nc
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1B_DROS_BL-__n3_-_larva(70).nc
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1B_DROS_BL-__n3_-_larva(8).nc
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1B_DROS_BL-__n3_-_larva(9).nc
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2_DROS_DEC2014_-_larva(10).nc
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2_DROS_DEC2014_-_larva(11).nc
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2_DROS_DEC2014_-_larva(12).nc
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2_DROS_DEC2014_-_larva(13).nc
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2_DROS_DEC2014_-_larva(14).nc
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2_DROS_DEC2014_-_larva(15).nc
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2_DROS_DEC2014_-_larva(16).nc
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2_DROS_DEC2014_-_larva(17).nc
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2_DROS_DEC2014_-_larva(18).nc
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2_DROS_DEC2014_-_larva(19).nc
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2_DROS_DEC2014_-_larva(33).nc
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2_DROS_DEC2014_-_larva(355).nc
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2A_DROS_BLsens-shi_n2_-_larva(0).nc
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2A_DROS_BLsens-shi_n2_-_larva(10).nc
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2A_DROS_BLsens-shi_n2_-_larva(2).nc
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2A_DROS_BLsens-shi_n2_-_larva(3).nc
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2A_DROS_BLsens-shi_n2_-_larva(4).nc
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2A_DROS_BLsens-shi_n2_-_larva(5).nc
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2A_DROS_BLsens-shi_n2_-_larva(6).nc
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2A_DROS_BLsens-shi_n2_-_larva(7).nc
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2A_DROS_BLsens-shi_n2_-_larva(8).nc
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2A_DROS_BLsens-shi_n2_-_larva(9).nc
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2B_DROS_Blsens-shi_n3_-_larva(0).nc
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2B_DROS_Blsens-shi_n3_-_larva(1).nc
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2B_DROS_Blsens-shi_n3_-_larva(13).nc
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2B_DROS_Blsens-shi_n3_-_larva(2).nc
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2B_DROS_Blsens-shi_n3_-_larva(3).nc
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2B_DROS_Blsens-shi_n3_-_larva(4).nc
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3_DROS_DEC2014_-_larva(0).nc
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3_DROS_DEC2014_-_larva(1).nc
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3_DROS_DEC2014_-_larva(1231).nc
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3_DROS_DEC2014_-_larva(1253).nc
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3_DROS_DEC2014_-_larva(1306).nc
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3_DROS_DEC2014_-_larva(1617).nc
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3_DROS_DEC2014_-_larva(1938).nc
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3_DROS_DEC2014_-_larva(2).nc
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3_DROS_DEC2014_-_larva(2256).nc
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3_DROS_DEC2014_-_larva(2372).nc
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3_DROS_DEC2014_-_larva(2425).nc
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3_DROS_DEC2014_-_larva(25).nc
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3_DROS_DEC2014_-_larva(2508).nc
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3_DROS_DEC2014_-_larva(2570).nc
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3_DROS_DEC2014_-_larva(2626).nc
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3_DROS_DEC2014_-_larva(2714).nc
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3_DROS_DEC2014_-_larva(2874).nc
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3_DROS_DEC2014_-_larva(3).nc
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3_DROS_DEC2014_-_larva(326).nc
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3_DROS_DEC2014_-_larva(4).nc
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3_DROS_DEC2014_-_larva(5).nc
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3_DROS_DEC2014_-_larva(6).nc
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4_DROS_DEC2014_-_larva(0).nc
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4_DROS_DEC2014_-_larva(1).nc
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4_DROS_DEC2014_-_larva(10).nc
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4_DROS_DEC2014_-_larva(11).nc
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4_DROS_DEC2014_-_larva(3).nc
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4_DROS_DEC2014_-_larva(5).nc
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4_DROS_DEC2014_-_larva(510).nc
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4_DROS_DEC2014_-_larva(517).nc
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4_DROS_DEC2014_-_larva(518).nc
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4_DROS_DEC2014_-_larva(519).nc
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4_DROS_DEC2014_-_larva(520).nc
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4_DROS_DEC2014_-_larva(533).nc
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4_DROS_DEC2014_-_larva(534).nc
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4_DROS_DEC2014_-_larva(535).nc
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4_DROS_DEC2014_-_larva(536).nc
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4_DROS_DEC2014_-_larva(537).nc
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4_DROS_DEC2014_-_larva(538).nc
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4_DROS_DEC2014_-_larva(543).nc
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4_DROS_DEC2014_-_larva(544).nc
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4_DROS_DEC2014_-_larva(7).nc
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4_DROS_DEC2014_-_larva(8).nc
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5_DROS_BL-shi_n3_-_larva(10).nc
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5_DROS_BL-shi_n3_-_larva(15).nc
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5_DROS_BL-shi_n3_-_larva(171).nc
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5_DROS_BL-shi_n3_-_larva(2).nc
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5_DROS_BL-shi_n3_-_larva(20).nc
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5_DROS_BL-shi_n3_-_larva(201).nc
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5_DROS_BL-shi_n3_-_larva(202).nc
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5_DROS_BL-shi_n3_-_larva(203).nc
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5_DROS_BL-shi_n3_-_larva(209).nc
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5_DROS_BL-shi_n3_-_larva(224).nc
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5_DROS_BL-shi_n3_-_larva(260).nc
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5_DROS_BL-shi_n3_-_larva(3).nc
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5_DROS_BL-shi_n3_-_larva(347).nc
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5_DROS_BL-shi_n3_-_larva(450).nc
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5_DROS_BL-shi_n3_-_larva(459).nc
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5_DROS_BL-shi_n3_-_larva(462).nc
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5_DROS_BL-shi_n3_-_larva(466).nc
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5_DROS_BL-shi_n3_-_larva(467).nc
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5_DROS_BL-shi_n3_-_larva(471).nc
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5_DROS_BL-shi_n3_-_larva(474).nc
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5_DROS_BL-shi_n3_-_larva(475).nc
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5_DROS_BL-shi_n3_-_larva(482).nc
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5_DROS_BL-shi_n3_-_larva(496).nc
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5_DROS_BL-shi_n3_-_larva(497).nc
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5_DROS_BL-shi_n3_-_larva(529).nc
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5_DROS_BL-shi_n3_-_larva(540).nc
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5_DROS_BL-shi_n3_-_larva(549).nc
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5_DROS_BL-shi_n3_-_larva(555).nc
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5_DROS_BL-shi_n3_-_larva(557).nc
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5_DROS_BL-shi_n3_-_larva(567).nc
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5_DROS_BL-shi_n3_-_larva(6).nc
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5_DROS_BL-shi_n3_-_larva(68).nc
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5_DROS_BL-shi_n3_-_larva(81).nc
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BL-__n2_22deg_-_larva(0).nc
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BL-__n2_22deg_-_larva(1).nc
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BL-__n2_22deg_-_larva(101).nc
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BL-__n2_22deg_-_larva(102).nc
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BL-__n2_22deg_-_larva(104).nc
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BL-__n2_22deg_-_larva(107).nc
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BL-__n2_22deg_-_larva(108).nc
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BL-__n2_22deg_-_larva(109).nc
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BL-__n2_22deg_-_larva(110).nc
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BL-__n2_22deg_-_larva(111).nc
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BL-__n2_22deg_-_larva(112).nc
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BL-__n2_22deg_-_larva(113).nc
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BL-__n2_22deg_-_larva(114).nc
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BL-__n2_22deg_-_larva(117).nc
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BL-__n2_22deg_-_larva(120).nc
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BL-__n2_22deg_-_larva(121).nc
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BL-__n2_22deg_-_larva(122).nc
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BL-__n2_22deg_-_larva(123).nc
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BL-__n2_22deg_-_larva(124).nc
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BL-__n2_22deg_-_larva(126).nc
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BL-__n2_22deg_-_larva(127).nc
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BL-__n2_22deg_-_larva(128).nc
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BL-__n2_22deg_-_larva(129).nc
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BL-__n2_22deg_-_larva(130).nc
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BL-__n2_22deg_-_larva(2).nc
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BL-__n2_22deg_-_larva(28).nc
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BL-__n2_22deg_-_larva(3).nc
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BL-__n2_22deg_-_larva(33).nc
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BL-__n2_22deg_-_larva(4).nc
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BL-__n2_22deg_-_larva(6).nc
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BL-__n2_22deg_-_larva(8).nc
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BL-__n2_22deg_-_larva(9).nc
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BL-__n2_22deg_-_larva(90).nc
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BL-__n2_22deg_-_larva(93).nc
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BL-__n2_22deg_-_larva(95).nc
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BL-__n2_22deg_-_larva(97).nc
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MB247-__n1_-_larva(0).nc
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MB247-__n1_-_larva(1).nc
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MB247-__n1_-_larva(2).nc
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MB247-__n1_-_larva(3).nc
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MB247-__n1_-_larva(4).nc
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MB247-__n1_-_larva(6).nc
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MB247-__n1_-_larva(7).nc
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MB247-__n1_-_larva(8).nc
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MB247-__n1_-_larva(9).nc
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MB247-__n2_-_larva(0).nc
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MB247-__n2_-_larva(1).nc
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MB247-__n2_-_larva(12).nc
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MB247-__n2_-_larva(13).nc
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MB247-__n2_-_larva(14).nc
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MB247-__n2_-_larva(2).nc
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MB247-__n2_-_larva(3).nc
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MB247-__n2_-_larva(339).nc
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MB247-__n2_-_larva(4).nc
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MB247-__n2_-_larva(441).nc
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MB247-__n2_-_larva(450).nc
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MB247-__n2_-_larva(454).nc
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MB247-__n2_-_larva(5).nc
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MB247-__n2_-_larva(6).nc
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MB247-__n2_-_larva(627).nc
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MB247-__n2_-_larva(631).nc
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MB247-__n3_-_larva(0).nc
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MB247-__n3_-_larva(1).nc
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MB247-__n3_-_larva(2).nc
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MB247-__n3_-_larva(3).nc
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MB247-__n3_-_larva(4).nc
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MB247-__n3_-_larva(432).nc
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MB247-__n3_-_larva(5).nc
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MB247-__n3_-_larva(6).nc
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MB247-__n3_-_larva(7).nc
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MB247-__n3_-_larva(8).nc
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MB247-__n3_-_larva(9).nc
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MB247-shi-n1_-_larva(0).nc
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MB247-shi-n1_-_larva(1).nc
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MB247-shi-n1_-_larva(2).nc
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MB247-shi-n1_-_larva(6).nc
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MB247-shi-n1_-_larva(8).nc
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MB247-shi-n1_-_larva(9).nc
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MB247-shi-n2_-_larva(0).nc
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MB247-shi-n2_-_larva(3).nc
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MB247-shi-n2_-_larva(6).nc
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MB247-shi-n2_-_larva(7).nc
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MB247-shi-n2_-_larva(8).nc
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MB247-shi-n2_-_larva(9).nc
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MB247-shi-n3_-_larva(0).nc
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MB247-shi-n3_-_larva(1).nc
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MB247-shi-n3_-_larva(2).nc
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MB247-shi-n3_-_larva(3).nc
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MB247-shi-n3_-_larva(4).nc
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MB247-shi-n3_-_larva(5).nc
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MB247-shi-n3_-_larva(6).nc
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MB247-shi-n3_-_larva(7).nc
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MB247-shi-n3_-_larva(8).nc
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MB247-shi-n3_-_larva(9).nc
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newBL-rprhid-2_-_larva(0).nc
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newBL-rprhid-2_-_larva(1).nc
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newBL-rprhid-2_-_larva(2).nc
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newBL-rprhid-2_-_larva(3).nc
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newBL-rprhid-2_-_larva(4).nc
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newBL-rprhid-2_-_larva(5).nc
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newBL-rprhid-2_-_larva(6).nc
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newBL-rprhid-2_-_larva(7).nc
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newBL-rprhid-2_-_larva(8).nc
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newBL-rprhid-3_-_larva(0).nc
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newBL-rprhid-3_-_larva(1).nc
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newBL-rprhid-3_-_larva(2).nc
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newBL-rprhid-3_-_larva(4).nc
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newBL-rprhid-3_-_larva(5).nc
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newBL-rprhid-4_-_larva(0).nc
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newBL-rprhid-4_-_larva(2).nc
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newBL-rprhid-4_-_larva(3).nc
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newBL-rprhid-4_-_larva(4).nc
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newBL-rprhid-4_-_larva(5).nc
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newBL-rprhid-4_-_larva(6).nc
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newBL-rprhid-4_-_larva(7).nc
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newBL-rprhid-4_-_larva(8).nc
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newBL-rprhid-5_-_larva(0).nc
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newBL-rprhid-5_-_larva(1).nc
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newBL-rprhid-5_-_larva(2).nc
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newBL-rprhid-5_-_larva(3).nc
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newBL-rprhid-5_-_larva(4).nc
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newBL-rprhid-5_-_larva(5).nc
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newBL-rprhid-5_-_larva(6).nc
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newBL-rprhid-5_-_larva(7).nc
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newBL-rprhid-5_-_larva(8).nc
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newBL-rprhidcontrol-1_-_larva(0).nc
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1_DROS_DEC2014_-_larva(1).csv
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Supplementary_File_3.xlsx
Abstract
Efficient searching for resources such as food by animals is key to their survival. It has been proposed that diverse animals from insects to sharks and humans adopt searching patterns that resemble a simple Lévy random walk, which is theoretically optimal for ‘blind foragers’ to locate sparse, patchy resources. To test if such patterns are generated intrinsically, or arise via environmental interactions, we tracked free-moving Drosophila larvae with (and without) blocked synaptic activity in the brain, suboesophageal ganglion (SOG) and sensory neurons. In brain-blocked larvae we found that extended substrate exploration emerges as multi-scale movement paths similar to truncated Lévy walks. Strikingly, power-law exponents of brain/SOG/sensory-blocked larvae averaged 1.96, close to a theoretical optimum (µ = 2.0) for locating sparse resources. Thus, efficient spatial exploration can emerge from autonomous patterns in neural activity. Our results provide the strongest evidence so far for the intrinsic generation of Lévy-like movement patterns.
Methods
The exploratory behaviour was monitored using a Frustrated Total Internal Reflection (FTIR)-based Imaging Method for high throughput locomotion analysis. The 240 X 240 mm arena was coated with a 2 mm thick layer of 0.8% agar and placed within a temperature controlled LMS220 chamber in the dark at 22oC or at 33 ± 1 oC. In each trial we tracked 10 young third instar larvae (mean lenght, 2.37 mm ± 0.57 S.D.; n = 90) for 1 h at 2fps with a Basler acA2040-180km CMOS camera using Pylon and StreamPix software, mounted with a 16mm KOWA IJM3sHC.SW VIS-NIR Lens and 825nm high performance longpass filter (Schneider, IF-093). The x,y coordinates of individual larvae exploring the agar were obtained using the FIM track free software (Risse, B., Thomas, S., Otto, N., Löpmeier, T., Valkov, D., Jiang, X., Klämbt, C. FIM, a novel FTIR-based imaging method for high throughput locomotion analysis. PLoS ONE 8, e53963 (2013)). A simple linear smoothing was applied to remove the jaggedness of the track caused by the integer (pixel) based recording. To achieve this two 1D filters were used, one for movement in x and one for movement in y, with parameters for both as follows: position state minimum variance = 0.5; velocity state minimum vari- ance = 0.5; measurement covariance = 1.0. These parameters smoothed the track while introducing a minimum change to the track locations
Usage notes
Details on genotypes and nomenclature are available in manuscript.
Treatments and their corresponding track file names are shown in Supplementary file 3, which is included in dataset.
CSV files show x, y coordinates in mm at 2Hz (disregard time column) after the application of the Kalman processing.
Files called "15Hz ..." were collected at 15Hz.