Data matrix for phylogeography of Euphorbia jolkinii
Data files
Apr 24, 2024 version files 8.30 MB
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Euphorbia_jolkinii_MIGseq.phylip
65.54 KB
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Euphorbia_jolkinii_plastome_CDS.fas
2.14 MB
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Euphorbia_jolkinii_plastome.fas
6.09 MB
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README.md
465 B
Abstract
In this study, we conducted phylogenomic analyses on the plastome and genome-wide nuclearSNP of Euphorbia jolkinii and its relative. We archived the data matrix for the analyses.
Methods
Euphorbia_jolkinii_plastome.fas: plasome sequences assembled and aligned from NGS short reads.
Euphorbia_jolkinii_plastome_CDS.fas: plasome sequences CDS only assembled and aligned from NGS short reads.
Euphorbia_jolkinii_MIGseq.phylip: SNPs calling by stacks from the MIG-seq.
Usage notes
Euphorbia_jolkinii_plastome.fas: MEGA, RAxML, PopART.
Euphorbia_jolkinii_plastome_CDS.fas: BEAST.
Euphorbia_jolkinii_MIGseq.phylip: STRUCTURE, TreeMix, DIYABC.