Finite element models of human left atria with fibrotic remodeling
Data files
Abstract
Stroke is a leading cause of death and disability worldwide. Atrial myopathy, including fibrosis, is associated with an increased risk of ischemic stroke, but the mechanisms underlying this association are poorly understood. Fibrosis modifies myocardial structure, impairing electrical propagation and tissue biomechanics, and creating stagnant flow regions where clots could form. Fibrosis can be mapped non-invasively using late gadolinium enhancement magnetic resonance imaging (LGE-MRI). However, fibrosis maps are not currently incorporated into stroke risk calculations or computational electro-mechano-fluidic models. We present multi-physics simulations of left atrial (LA) myocardial motion and hemodynamics using patient-specific anatomies and fibrotic maps from LGE-MRI. We modify tissue stiffness and active tension generation in fibrotic regions and investigate how these changes affect LA flow for different fibrotic burdens. We find that fibrotic regions and, to a lesser extent, non-fibrotic regions experience reduced myocardial strain, resulting in decreased LA emptying fraction consistent with clinical observations. Both fibrotic tissue stiffening and hypocontractility independently reduce LA function, but together, these two alterations cause more pronounced effects than either one alone. Fibrosis significantly alters flow patterns throughout the atrial chamber, particularly, the filling and emptying jets of the left atrial appendage (LAA). The effects of fibrosis in LA flow are largely captured by the concomitant changes in LA emptying fraction except inside the LAA, where a multi-factorial behavior is observed. This work illustrates how high-fidelity, multi-physics models can be used to study thrombogenesis mechanisms in patient-specific anatomies, shedding light onto the links between atrial fibrosis and ischemic stroke.
README: Finite element models of human left atria with fibrotic remodeling
This dataset contains finite element models of human left atria with fibrotic remodeling, to accompany the publication by Gonzalo, Augustin, et al. (2024). DOI: 10.1113/JP287011
Please contact co-corresponding author Patrick Boyle (pmjboyle@uw.edu) with any questions, concerns, complaints, or difficulties.
Description of the data and file structure
Each VTK file contains point, element, and vector (fiber orientation associated with each element) data for one patient-derived human left atrial model. Elements are tagged (via the elemTag data field) based on anatomical location and tissue type:
tag 11 - non-fibrotic left atrial (LA) body
tag 13 - non-fibrotic left atrial appendage (LAA)
tag 15 - fibrotic LA body
tag 17 - fibrotic LAA
tag 21 - a subset of elements along the left superior pulmonary vein (LSPV) boundary
tag 23 - a subset of elements along the left inferior pulmonary vein (LIPV) boundary
tag 25 - a subset of elements along the right superior pulmonary vein (RSPV) boundary
tag 27 - a subset of elements along the right inferior pulmonary vein (RIPV) boundary
Sharing/Access information
All files contained in this repository are published under the Creative Commons CC0 license. Future users are thus allowed and encouraged to distribute, remix, adapt, and build upon the material in any medium or format, with no conditions. Although CC0 does not require attribution, we encourage all parties who reuse this dataset in any way to cite the paper with which it was published (Gonzalo, Augustin, et al. 2024 doi: 10.1113/JP287011).
Code/software information
ParaView can be downloaded from https://www.paraview.org/download/
Example usage -- tested using ParaView 5.12 on Ubuntu 22.04
$ paraview Fib47.vtk
Methods
This dataset contains finite element models of human left atria with fibrotic remodeling, to accompany the publication by Gonzalo, Augustin, et al. (2024). The anatomical models included in the dataset are identical to those that were used to conduct computational simulations, as in the paper. No further post-processing has been applied. Please refer to the aforementioned paper for a complete accounting of the imaging techniques used upstream from the model reconstruction process.