Data from: the Siam chicken bioresource project: genetic diversity and origin of Thai chicken breeds
Data files
Sep 19, 2023 version files 168.61 KB
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Chee_Fah_Fah_Luang.csv
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Lao_Pa_Koi_chicken.csv
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Mae_Hong_Son_Chicken_.csv
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README.md
Abstract
Three separate studies have delved into the genetic characteristics, origins, and unique attributes of various chicken breeds in Thailand, providing crucial insights for future breeding programs.
The first study focused on Chee Fah and Fah Luang, black-boned chicken breeds in Chiang Rai, Thailand. Despite their economic and cultural significance, little was known about their genetics. Mitochondrial DNA D-loop sequencing and microsatellite genotyping revealed shared genetic heritage with Chinese black-boned chickens, suggesting their origin. Distinct genetic patterns were identified compared to Thai domestic chickens and red junglefowl, indicating crossbreeding and introgression during domestication. Interestingly, the Chee Fah and Fah Luang chickens from different localities exhibited different gene pool structures, possibly influenced by environmental factors like elevation.
The second study centered on the Mae Hong Son chicken, a local breed in Northern Thailand. Genetic analyses, including microsatellite markers and mitochondrial D-loop sequencing, unveiled high genetic diversity and unique allelic gene pool patterns. This breed likely originated as a crossbreed between red junglefowl and Thai indigenous village chickens, adapting to local environmental, social, and cultural conditions.
The third study examined Lao Pa Koi (LPK) chickens, a popular fighting breed in Thailand. Genetic diversity assessments using microsatellite markers and mitochondrial DNA (mtDNA) D-loop sequences confirmed high variability and genetic admixture between red junglefowl and Thai domestic chickens. Spatial suitability analysis highlighted the importance of elevation in shaping LPK chicken distribution.
In conclusion, these studies collectively enhance our understanding of the genetic foundations, origins, and adaptation of diverse chicken breeds in Thailand. This knowledge is crucial for developing effective breeding programs and preserving these valuable genetic resources.
README: The Siam chicken bioresource project
Genotypes data of Thailand chickens under the Siam chicken bioresource project
Description of the data and file structure
Genotypes data of Thailand chickens under the Siam chicken bioresource project
Sharing/Access information
Data was derived from the following sources:
*Microsatellite genotyping data of Budi, T., Singchat, W., Tanglertpaibul, N., Wongloet, W., Chaiyes, A., Ariyaraphong, N., ... & Srikulnath, K. (2023). Thai Local Chicken Breeds, Chee Fah and Fah Luang, Originated from Chinese Black-Boned Chicken with Introgression of Red Junglefowl and Domestic Chicken Breeds. Sustainability, 15(8), 6878.
consist of Chee_Fah_Fah_Luang.csv.
*Microsatellite genotyping data of Wongloet, W., Singchat, W., Chaiyes, A., Ali, H., Piangporntip, S., Ariyaraphong, N., ... & Srikulnath, K. (2023). Environmental and Socio–Cultural Factors Impacting the Unique Gene Pool Pattern of Mae Hong-Son Chicken. Animals, 13(12), 1949.
consist of Mae_Hong_Son_Chicken_.csv, and ★Supplementary_TableMHS.docx.
*Microsatellite genotyping data of Genetic admixture and diversity in Thai domestic chickens revealed through analysis of Lao Pa Koi fighting cocks.
consist of Lao_Pa_Koi_chicken.csv.