Malaria parasites (genus Plasmodium) are important agents of infectious disease in birds and multiple factors including warming temperatures and environmental contamination may act to increase their geographic and host ranges. Here, we examined the role of geographical variation and environmental mercury exposure in malaria parasite infection dynamics in an imperiled songbird species with high mercury exposition, the Saltmarsh Sparrow (Ammospiza caudacutus). Using PCR methods, we screened 280 Saltmarsh Sparrows from across their breeding range for malaria parasite infection. We detected malaria parasites in 17% of sampled birds and a total of six Plasmodium lineages. Prevalence of infection and diversity of parasite lineages varied across the breeding range of the Saltmarsh Sparrow and increased at more northern latitudes. Although mercury is a known immunosuppressant and has been documented to alter an individual’s susceptibility to pathogens, we did not find a significant difference in blood mercury levels between infected and not infected birds, perhaps due to sampling methods and/or small sample sizes. As a specialist of coastal wetlands, the Saltmarsh Sparrow is an excellent indicator species for ecological health, and the patterns of malaria parasite infection with host distribution and mercury suggest that birds at northern latitudes are at greater risk of disease and should be priorities for conservation, habitat, and pathogen monitoring.