Sperm cryopreservation is routinely used in reproductive medicine, livestock production, and wildlife management. Its effect on offspring performance is often assumed negligible, but this still remains to be confirmed in well controlled within-subject experiments. We use a vertebrate model that allows to experimentally separate parental and environmental effects to test whether sperm cryopreservation influences offspring phenotype under stress and non-stress conditions, and whether such effects are male-specific. Wild brown trout (Salmo trutta) were stripped for their gametes, and a portion of each male’s milt was cryopreserved. Then, 960 eggs were simultaneously fertilized with either non-cryopreserved or frozen-thawed semen and raised singly in the presence or absence of a pathogen. We found no significant effects of cryopreservation on fertilization rates, and no effects on growth, survival, nor pathogen resistance during the embryo stage. However, fertilization by cryopreserved sperm lead to significantly reduced larval growth after hatching. Males varied in genetic quality as determined from offspring performance, but effects of cryopreservation on larval growth were not male specific. We conclude that cryopreservation causes a reduction of offspring growth that is easily overlooked because it only manifests itself at later developmental stages when many other factors affect growth and survival, too.