Data from: Oxidative stress in the retina and retinal pigment epithelium (RPE): role of aging, and DJ-1
Data files
Aug 20, 2020 version files 447.71 MB
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Fig.1A-C57BL_NaIO3_-exp2_LM_Phall_10.3_Merg_Proc_ch00.tif
6.46 MB
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Fig.1A-C57BL_NaIO3_IP_IV-Phall_LM_IP20.1_Merg_Proc_ch00.tif
5.47 MB
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Fig.1A-C57BL_NaIO3_IP_IV-Phall_LM_IVC15.2_Merg_Proc_ch00.tif
7.16 MB
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Fig.1A-C57BL_PBS_-exp2_LM_Phall_3380_Merg_Proc_ch00.tif
8.72 MB
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Fig.1A-DJ-1_KO_NaIO3_IV_IVD10.2_Merg_Proc_ch00.tif
5.97 MB
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Fig.1A-DJ-1_KO_NaIO3_IV_IVD20.2_Merg_Proc_ch00.tif
7.10 MB
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Fig.1A-DJ-1_KO_PBS2_LM_Phall_10x-01_Merg_ProcSnapshot_ch00.tif
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Fig.1A-DJKO_NaIO3_IP_IV-Phall_LM_IVD15.2_Merg_Proc_ch00.tif
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Fig.1B-1150-01.tif
10.97 MB
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Fig.1B-1152-01.tif
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Fig.1B-1155-Experiment-90-Extended_Depth_of_Focus-12-Unsharp_Mask-13.tif
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Fig.1B-646-01.tif
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Fig.1B-787.tif
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Fig.1B-791-01.tif
12.49 MB
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Fig.1B-834.4.tif
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Fig.1B-993-01.tif
11.10 MB
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Fig.1C-RPE_degenerated_area_(FM).pzfx
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Fig.1D-Measurement_of_degeneration_area.xlsx
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Fig.2A-GFAP-C3_01_Merg_Proc.tif
1.87 MB
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Fig.2A-GFAP-C57-6.4.1_01_Merg_Proc.tif
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Fig.2A-GFAP-DJ62.1.5_02_Merg_Proc.tif
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Fig.2A-GFAP-DJ7_03_Merg_Proc.tif
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Fig.2A-GFAP-DJ75.4.2_01_Merg_Proc.tif
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Fig.2A-GFAP-DJ75.4.3_01_Merg_Proc.tif
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Fig.2A-GFAP-IVC10.2_02_Merg_Proc.tif
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Fig.2A-GFAP-IVCPBS1_01_Merg_Proc.tif
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Fig.2B-NR-C3_02_Merg_Proc.tif
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Fig.2B-NR-C576.4.2_01_Merg_Proc.tif
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Fig.2B-NR-CPBS1_01_Merg_Proc.tif
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Fig.2B-NR-DJ44.2.3_02_Merg_Proc.tif
6.61 MB
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Fig.2B-NR-DJ62.1.5_03_Merg_Proc.tif
6.26 MB
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Fig.2B-NR-DJ7_02_Merg_Proc.tif
8.32 MB
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Fig.2B-NR-DJ75.4.3_02_Merg_Proc.tif
3.73 MB
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Fig.2B-NR-IVC10.2_01_Merg_Proc.tif
6.83 MB
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Fig.2C-AGE_DJ75.4.3_02_Merging_Processed001_ch01.tif
1.96 MB
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Fig.2C-AGE_IVC10.4_02_Merging_Processed001_ch01.tif
1.51 MB
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Fig.2C-AGE-C2_01_Merg.tif
2.94 MB
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Fig.2C-AGE-c6.4.1_01_Merg.tif
1.54 MB
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Fig.2C-AGE-DJ44.2.3_002_Merg.tif
2.37 MB
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Fig.2C-AGE-DJ7_01_Merg.tif
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Fig.2C-AGE-ivcpbs2_01_Merg.tif
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Fig.2C-AGE.lif_Dj3_01_Merg_Proc_R&B.tif
1.87 MB
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Fig.2D-Nile_Red.pzfx
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Fig.2E-Age-quant_Two-way_anova.pzfx
28.24 KB
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Fig.3A-Two-way_anova_qPCR_analysis_-_all_gene_Retina_aging.pzfx
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Fig.3B-qPCR_analysis_-_Prdx1-RPE-aging.pzfx
14.54 KB
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Fig.3B-qPCR_analysis_-_SOD2_RPE_aging.pzfx
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Fig.3B-qPCR_analysis-_Nrf2_RPE_aging.pzfx
15.77 KB
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Fig.3B-qPCR_analysis-_SOD1_RPE_aging.pzfx
75.89 KB
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Fig.3C-Two-way_anova_qPCR_analysis_-_all_gene_RETINA_3mo.pzfx
102.50 KB
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Fig.3D-Two-way_anova_qPCR_analysis_-_all_gene_RPE_3mo.pzfx
101.19 KB
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Fig.3E-Two-way_anova_qPCR_analysis_-_all_gene_Retina_15mo.pzfx
108.53 KB
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Fig.3F-Two-way_anova_qPCR_analysis_-_all_gene_RPE_15mo.pzfx
99.46 KB
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Fig.4A-Bactin_C57_ret_lane1to4-3mo_lane5to8-15mo.tif
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Fig.4A-Bactin_DJKO_ret_lane1to4-3mo_lane5to7-15mo.tif
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Fig.4A-DJ1-C57_ret_lane1to4-3mo_lane5to7-15mo.tif
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Fig.4A-DJ1-DJKO_ret_lane1to4-3mo_lane5to7-15mo.tif
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Fig.4A-Prdx1-C57_ret_lane1to4-3mo_lane5to8-15mo.tif
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Fig.4A-Prdx1-DJKO_ret_lane1to4-3mo_lane5to7-15mo.tif
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Fig.4A-SOD1-C57_ret_lane1to4-3mo_lane5to8-15mo.tif
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Fig.4A-SOD1-DJKO_ret_lane1to4-3mo_5to7-15mo.tif
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Fig.4B-WB_REt-SOD1-DJ1-Prdx1-aging-10-3-19.pzfx
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Fig.4C-Bactin-C57_RPE_lane1to4-3mo_lane5to7-15mo.tif
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Fig.4C-bactin-DJKO_RPE_lane1to3-3mo_lane4to7-15mo.tif
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Fig.4C-DJ1-C57_RPE_lane1to4-3mo_lane5to7-15mo.tif
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Fig.4C-DJ1-DJKO_RPE_lane1to3-3mo_lane4to7-15mo.tif
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Fig.4C-Prdx1-C57-RPE-lane1to4-3mo_lane5to7-15mo.tif
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Fig.4C-Prdx1-DJKO_RPE_lane1to3-3mo_lane4to7-15mo.tif
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Fig.4C-sod1-C57_RPE_lane1to4-3mo_lane5to7-15mo.tif
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Fig.4C-sod1-DJKO_RPE_lane1to3-3mo_lane4to7-15mo.tif
399.99 KB
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Fig.4D-WB-RPE-SOD1-Prdx1-Dj1_quant_10-9-19.pzfx
67.82 KB
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Figure_legends.docx
18.34 KB
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List_of_samples_in_figures.docx
15.52 KB
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Suppl._Fig1-Degenerated_Area_quantied
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Suppl._Fig2-C57&DJ-1KO_NaIO3_exp-_Phall_HM_IVC15.2-01_Proc_ch00.tif
288.78 KB
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Suppl._Fig2-C57&DJ-1KO_NaIO3_exp-_Phall_HM_IVD10.3-01_Proc_ch00.tif
334.28 KB
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Suppl._Fig2-C57&DJ-1KO_NaIO3_exp-_Phall_HM_IVD15.2-05_Proc_ch00.tif
336 KB
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Suppl._Fig2-C57BL_NaIO3_exp-_Phall_HM_3376-02_Processed001_ch00.tif
813.20 KB
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Suppl._Fig2-C57BL_NaIO3_exp-_Phall_HM_3404-11_Processed001Snapshot1_ch00.tif
987.32 KB
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Suppl._Fig2-C57BL_NaIO3_exp-_Phall_HM_3407-03_Processed001_ch00.tif
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Suppl._Fig2-DJ-1_KO_NaIO3_exp-Phall_HM_3363-04_Processed001_s0_ch00.tif
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Suppl._Fig2-DJ-1_KO_NaIO3_exp-Phall_HM_3364-02_Processed001_ch00.tif
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Suppl._Fig3-TB-1152-3mo-naio3-dj.tif
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Suppl._Fig3-TB-1155-15mo-pbs_dj.tif
36.74 MB
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Suppl._Fig3-TB-642-3mo-pbs_dj.tif
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Suppl._Fig3-TB-646-3mo-pbs.tif
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Suppl._Fig3-TB-694-3mo-naio3.tif
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Suppl._Fig3-TB-787-15mo-naio3.tif
19.87 MB
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Suppl._Fig3-TB-791-15mo-naio3_dj.tif
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Suppl._Fig3-TB-993-15mo-pbs.tif
19.87 MB
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Suppl._Fig4-GS-C2_sec2_C2_sec2_Merg_Proc.tif
1.21 MB
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Suppl._Fig4-GS-C6.4.1_sec1_C6.4.1_sec1_Merg_Proc.tif
1.31 MB
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Suppl._Fig4-GS-DJ3_sec1_DJ3_sec1_Merg_Proc.tif
1.76 MB
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Suppl._Fig4-GS-DJ7_sec1_DJ7_sec1_Merg_Proc.tif
1.36 MB
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Suppl._Fig4-GS-DJ75.4.2_sec2_DJ75.4.2_sec2_Merg_Proc.tif
1.07 MB
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Suppl._Fig4-GS-Dj75.4.3sec4_Dj75.4.3_sec4_Merg_Proc.tif
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Suppl._Fig4-GS-IVC10.8sec1_IVC10.8_sec1_Merg_Proc.tif
1.40 MB
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Suppl._Fig4-GS-IVCPBS1sec1_IVCPBS1_sec1_Merg_Proc.tif
1.05 MB
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Suppl._Fig5-Nrf2-3DNa1_01_Merg_Proc.tif
4.23 MB
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Suppl._Fig5-Nrf2-C2_01_Merg_Proc.tif
4.14 MB
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Suppl._Fig5-Nrf2-C6.4.2_02_Merg_Proc.tif
8.03 MB
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Suppl._Fig5-Nrf2-DJ2_02_Merg_Proc.tif
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Suppl._Fig5-Nrf2-DJ44.2.2_02_Merg_Proc.tif
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Suppl._Fig5-Nrf2-DJ7_01_Merg_Proc.tif
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Suppl._Fig5-Nrf2-IVC10.7_02_Merg_Proc.tif
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Suppl._Fig5-Nrf2-IVCPBS2_02_Merg_Proc.tif
1.08 MB
Oct 14, 2020 version files 447.73 MB
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Fig.1A-C57BL_NaIO3_-exp2_LM_Phall_10.3_Merg_Proc_ch00.tif
6.46 MB
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Fig.1A-C57BL_NaIO3_IP_IV-Phall_LM_IP20.1_Merg_Proc_ch00.tif
5.47 MB
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Fig.1A-C57BL_NaIO3_IP_IV-Phall_LM_IVC15.2_Merg_Proc_ch00.tif
7.16 MB
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Fig.1A-C57BL_PBS_-exp2_LM_Phall_3380_Merg_Proc_ch00.tif
8.72 MB
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Fig.1A-DJ-1_KO_NaIO3_IV_IVD10.2_Merg_Proc_ch00.tif
5.97 MB
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Fig.1A-DJ-1_KO_NaIO3_IV_IVD20.2_Merg_Proc_ch00.tif
7.10 MB
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Fig.1A-DJ-1_KO_PBS2_LM_Phall_10x-01_Merg_ProcSnapshot_ch00.tif
1.11 MB
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Fig.1A-DJKO_NaIO3_IP_IV-Phall_LM_IVD15.2_Merg_Proc_ch00.tif
6.73 MB
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Fig.1B-1150-01.tif
10.97 MB
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Fig.1B-1152-01.tif
8.58 MB
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Fig.1B-1155-Experiment-90-Extended_Depth_of_Focus-12-Unsharp_Mask-13.tif
13.01 MB
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Fig.1B-646-01.tif
12.42 MB
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Fig.1B-787.tif
12.60 MB
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Fig.1B-791-01.tif
12.49 MB
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Fig.1B-834.4.tif
12.43 MB
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Fig.1B-993-01.tif
11.10 MB
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Fig.1C-RPE_degenerated_area_(FM).pzfx
21.19 KB
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Fig.1D-Measurement_of_degeneration_area.xlsx
938.87 KB
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Fig.2A-GFAP-C3_01_Merg_Proc.tif
1.87 MB
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Fig.2A-GFAP-C57-6.4.1_01_Merg_Proc.tif
2.81 MB
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Fig.2A-GFAP-DJ62.1.5_02_Merg_Proc.tif
762.42 KB
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Fig.2A-GFAP-DJ7_03_Merg_Proc.tif
2.18 MB
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Fig.2A-GFAP-DJ75.4.2_01_Merg_Proc.tif
1.21 MB
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Fig.2A-GFAP-DJ75.4.3_01_Merg_Proc.tif
1.27 MB
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Fig.2A-GFAP-IVC10.2_02_Merg_Proc.tif
1.62 MB
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Fig.2A-GFAP-IVCPBS1_01_Merg_Proc.tif
1.50 MB
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Fig.2B-NR-C3_02_Merg_Proc.tif
3.35 MB
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Fig.2B-NR-C576.4.2_01_Merg_Proc.tif
5.58 MB
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Fig.2B-NR-CPBS1_01_Merg_Proc.tif
6.12 MB
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Fig.2B-NR-DJ44.2.3_02_Merg_Proc.tif
6.61 MB
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Fig.2B-NR-DJ62.1.5_03_Merg_Proc.tif
6.26 MB
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Fig.2B-NR-DJ7_02_Merg_Proc.tif
8.32 MB
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Fig.2B-NR-DJ75.4.3_02_Merg_Proc.tif
3.73 MB
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Fig.2B-NR-IVC10.2_01_Merg_Proc.tif
6.83 MB
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Fig.2C-AGE_DJ75.4.3_02_Merging_Processed001_ch01.tif
1.96 MB
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Fig.2C-AGE_IVC10.4_02_Merging_Processed001_ch01.tif
1.51 MB
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Fig.2C-AGE-C2_01_Merg.tif
2.94 MB
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Fig.2C-AGE-c6.4.1_01_Merg.tif
1.54 MB
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Fig.2C-AGE-DJ44.2.3_002_Merg.tif
2.37 MB
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Fig.2C-AGE-DJ7_01_Merg.tif
2.08 MB
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Fig.2C-AGE-ivcpbs2_01_Merg.tif
2.12 MB
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Fig.2C-AGE.lif_Dj3_01_Merg_Proc_R&B.tif
1.87 MB
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Fig.2D-Nile_Red.pzfx
102.20 KB
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Fig.2E-Age-quant_Two-way_anova.pzfx
28.24 KB
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Fig.3A-Two-way_anova_qPCR_analysis_-_all_gene_Retina_aging.pzfx
108.59 KB
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Fig.3B-qPCR_analysis_-_Prdx1-RPE-aging.pzfx
14.54 KB
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Fig.3B-qPCR_analysis_-_SOD2_RPE_aging.pzfx
14.58 KB
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Fig.3B-qPCR_analysis-_Nrf2_RPE_aging.pzfx
15.77 KB
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Fig.3B-qPCR_analysis-_SOD1_RPE_aging.pzfx
75.89 KB
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Fig.3C-Two-way_anova_qPCR_analysis_-_all_gene_RETINA_3mo.pzfx
102.50 KB
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Fig.3D-Two-way_anova_qPCR_analysis_-_all_gene_RPE_3mo.pzfx
101.19 KB
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Fig.3E-Two-way_anova_qPCR_analysis_-_all_gene_Retina_15mo.pzfx
108.53 KB
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Fig.3F-Two-way_anova_qPCR_analysis_-_all_gene_RPE_15mo.pzfx
99.46 KB
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Fig.4A-Bactin_C57_ret_lane1to4-3mo_lane5to8-15mo.tif
415.01 KB
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Fig.4A-Bactin_DJKO_ret_lane1to4-3mo_lane5to7-15mo.tif
415.97 KB
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Fig.4A-DJ1-C57_ret_lane1to4-3mo_lane5to7-15mo.tif
577.52 KB
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Fig.4A-DJ1-DJKO_ret_lane1to4-3mo_lane5to7-15mo.tif
404.42 KB
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Fig.4A-Prdx1-C57_ret_lane1to4-3mo_lane5to8-15mo.tif
605.54 KB
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Fig.4A-Prdx1-DJKO_ret_lane1to4-3mo_lane5to7-15mo.tif
685.70 KB
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Fig.4A-SOD1-C57_ret_lane1to4-3mo_lane5to8-15mo.tif
602.97 KB
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Fig.4A-SOD1-DJKO_ret_lane1to4-3mo_5to7-15mo.tif
658.23 KB
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Fig.4B-WB_REt-SOD1-DJ1-Prdx1-aging-10-3-19.pzfx
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Fig.4C-Bactin-C57_RPE_lane1to4-3mo_lane5to7-15mo.tif
543.24 KB
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Fig.4C-bactin-DJKO_RPE_lane1to3-3mo_lane4to7-15mo.tif
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Fig.4C-DJ1-C57_RPE_lane1to4-3mo_lane5to7-15mo.tif
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Fig.4C-DJ1-DJKO_RPE_lane1to3-3mo_lane4to7-15mo.tif
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Fig.4C-Prdx1-C57-RPE-lane1to4-3mo_lane5to7-15mo.tif
545.14 KB
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Fig.4C-Prdx1-DJKO_RPE_lane1to3-3mo_lane4to7-15mo.tif
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Fig.4C-sod1-C57_RPE_lane1to4-3mo_lane5to7-15mo.tif
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Fig.4C-sod1-DJKO_RPE_lane1to3-3mo_lane4to7-15mo.tif
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Fig.4D-WB-RPE-SOD1-Prdx1-Dj1_quant_10-9-19.pzfx
67.82 KB
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Figure_legends.docx
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List_of_samples_in_figures.docx
15.52 KB
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Suppl._Fig1-Degenerated_Area_quantied
898.35 KB
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Suppl._Fig2-C57&DJ-1KO_NaIO3_exp-_Phall_HM_IVC15.2-01_Proc_ch00.tif
288.78 KB
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Suppl._Fig2-C57&DJ-1KO_NaIO3_exp-_Phall_HM_IVD10.3-01_Proc_ch00.tif
334.28 KB
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Suppl._Fig2-C57&DJ-1KO_NaIO3_exp-_Phall_HM_IVD15.2-05_Proc_ch00.tif
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Suppl._Fig2-C57BL_NaIO3_exp-_Phall_HM_3376-02_Processed001_ch00.tif
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Suppl._Fig2-C57BL_NaIO3_exp-_Phall_HM_3404-11_Processed001Snapshot1_ch00.tif
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Suppl._Fig2-C57BL_NaIO3_exp-_Phall_HM_3407-03_Processed001_ch00.tif
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Suppl._Fig2-DJ-1_KO_NaIO3_exp-Phall_HM_3363-04_Processed001_s0_ch00.tif
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Suppl._Fig2-DJ-1_KO_NaIO3_exp-Phall_HM_3364-02_Processed001_ch00.tif
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Suppl._Fig3-TB-1152-3mo-naio3-dj.tif
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Suppl._Fig3-TB-1155-15mo-pbs_dj.tif
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Suppl._Fig3-TB-642-3mo-pbs_dj.tif
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Suppl._Fig3-TB-646-3mo-pbs.tif
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Suppl._Fig3-TB-694-3mo-naio3.tif
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Suppl._Fig3-TB-787-15mo-naio3.tif
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Suppl._Fig3-TB-791-15mo-naio3_dj.tif
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Suppl._Fig3-TB-993-15mo-pbs.tif
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Suppl._Fig4-GS-C2_sec2_C2_sec2_Merg_Proc.tif
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Suppl._Fig4-GS-C6.4.1_sec1_C6.4.1_sec1_Merg_Proc.tif
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Suppl._Fig4-GS-DJ3_sec1_DJ3_sec1_Merg_Proc.tif
1.76 MB
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Suppl._Fig4-GS-DJ7_sec1_DJ7_sec1_Merg_Proc.tif
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Suppl._Fig4-GS-DJ75.4.2_sec2_DJ75.4.2_sec2_Merg_Proc.tif
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Suppl._Fig4-GS-Dj75.4.3sec4_Dj75.4.3_sec4_Merg_Proc.tif
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Suppl._Fig4-GS-IVC10.8sec1_IVC10.8_sec1_Merg_Proc.tif
1.40 MB
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Suppl._Fig4-GS-IVCPBS1sec1_IVCPBS1_sec1_Merg_Proc.tif
1.05 MB
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Suppl._Fig5-Nrf2-3DNa1_01_Merg_Proc.tif
4.23 MB
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Suppl._Fig5-Nrf2-C2_01_Merg_Proc.tif
4.14 MB
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Suppl._Fig5-Nrf2-C6.4.2_02_Merg_Proc.tif
8.03 MB
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Suppl._Fig5-Nrf2-DJ2_02_Merg_Proc.tif
4.43 MB
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Suppl._Fig5-Nrf2-DJ44.2.2_02_Merg_Proc.tif
4.46 MB
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Suppl._Fig5-Nrf2-DJ7_01_Merg_Proc.tif
10.40 MB
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Suppl._Fig5-Nrf2-IVC10.7_02_Merg_Proc.tif
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Suppl._Fig5-Nrf2-IVCPBS2_02_Merg_Proc.tif
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Supplemental_Table_S4.docx
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Apr 20, 2022 version files 453.21 MB
Abstract
High levels of oxidative radicals generated by daily light exposure and high metabolic rate suggest that the antioxidant machinery of the retina and retinal pigment epithelium (RPE) is crucial for their survival. DJ-1 is a redox-sensitive protein that has been shown to have neuroprotective function in the brain in Parkinson’s disease and other neurodegenerative diseases. Here, we analyzed the role of DJ-1 in the retina during oxidative stress and aging. We induced low-level oxidative stress in young (3-month-old) and old (15-month-old) C57BL/6J (WT) and DJ-1 knockout (KO) mice and evaluated effects in the RPE and retina. Absence of DJ-1 resulted in increased retinal dysfunction in response to low levels of oxidative stress. Our findings suggest that loss of DJ-1 affects the RPE antioxidant machinery, rendering it unable to combat and neutralize low-level oxidative stress, irrespective of age. Moreover, they draw a parallel to the retinal degeneration observed in AMD, where the occurrence of genetic variants may leave the retina and RPE unable to fight sustained, low-levels of oxidative stress.