Data from: Geographic range dynamics drove ancient hybridization in a lineage of angiosperms

Folk RA, Visger CJ, Soltis PS, Soltis DE, Guralnick RP

Date Published: March 9, 2018

DOI: https://doi.org/10.5061/dryad.7cr0c76

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Title Occurrence records
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Description A zip archive of all occurrence records used in this study in Maxent format, one file per species.
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Title Ancestral reconstruction -- narrow-buffer models
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Description Ancestral reconstruction results (point estimates and credibility intervals) for narrow-buffer models. This is in BEAST-compatible NEXUS format and can be read by FigTree.
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Title Ancestral reconstruction -- wide-buffer models
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Description Ancestral reconstruction results (point estimates and credibility intervals) for wide-buffer models. This is in BEAST-compatible NEXUS format and can be read by FigTree.
Download widebuffer_tree_labels_ranges_clean.tre (36.02 Kb)
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Title Ancestral reconstruction -- distance-buffer models
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Description Ancestral reconstruction results (point estimates and credibility intervals) for distance-buffer models. This is in BEAST-compatible NEXUS format and can be read by FigTree.
Download distancebuffer_tree_labels_midpointsandtips.tre (66.54 Kb)
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Title Ancestral reconstruction pooled, thinned MCMC -- narrow-buffer models
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Description Pooled MCMC chains for ancestral reconstruction results, thinned as discussed in the manuscript, for narrow-buffer models. These are TSV files in BayesTraits format; for variable numbering see the translation table in this deposition.
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Title Ancestral reconstruction pooled, thinned MCMC -- wide-buffer models
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Description Pooled MCMC chains for ancestral reconstruction results, thinned as discussed in the manuscript, for wide-buffer models. These are TSV files in BayesTraits format; for variable numbering see the translation table in this deposition.
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Title Ancestral reconstruction pooled, thinned MCMC -- distance-buffer models
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Description Pooled MCMC chains for ancestral reconstruction results, thinned as discussed in the manuscript, for distance-buffer models. These are TSV files in BayesTraits format; for variable numbering see the translation table in this deposition.
Download thinned_MCMC_distancebuffer.zip (629.0 Mb)
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Title Full nuclear phylogenomic analysis -- best tree with bipartition frequencies
Downloaded 2 times
Description Analysis of all taxa (i.e., in some cases multiple accessions per species), from which a pruned one-tip-per-species tree was used for all downstream ancestral reconstruction analyses. Tip labels for all taxa newly sampled in this analysis, Linnaean binomials were used. For all taxa sampled in previous work, sample codes were used to match voucher references in other works; for these refer to Folk et al., Systematic Biology, 66(3): 320–337; refer also to the associated Dryad deposition, https://doi.org/10.5061/dryad.cd546 (in which see Online Appendix 1).
Download RAxML_bipartitions.277locipartitionednoin...ae.tre (4.954 Kb)
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Title Full nuclear phylogenomic analysis -- bootstrap trees
Downloaded 1 time
Description Analysis of all taxa (i.e., in some cases multiple accessions per species), from which a pruned one-tip-per-species tree was used for all downstream ancestral reconstruction analyses. Tip labels for all taxa newly sampled in this analysis, Linnaean binomials were used. For all taxa sampled in previous work, sample codes were used to match voucher references in other works; for these refer to Folk et al., Systematic Biology, 66(3): 320–337; refer also to the associated Dryad deposition, https://doi.org/10.5061/dryad.cd546 (in which see Online Appendix 1).
Download RAxML_bootstrap.277locipartitionednointron...kelae (4.743 Mb)
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Title Full nuclear phylogenomic analysis -- concatenated alignment
Downloaded 2 times
Description Analysis of all taxa (i.e., in some cases multiple accessions per species), from which a pruned one-tip-per-species tree was used for all downstream ancestral reconstruction analyses. Tip labels for all taxa newly sampled in this analysis, Linnaean binomials were used. For all taxa sampled in previous work, sample codes were used to match voucher references in other works; for these refer to Folk et al., Systematic Biology, 66(3): 320–337; refer also to the associated Dryad deposition, https://doi.org/10.5061/dryad.cd546 (in which see Online Appendix 1).
Download 277lociNewTaxa_modifiedalignment_extensive...kelae (11.10 Mb)
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Title BEAST dating analysis -- chloroplast data, lognormal prior
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Description BEAST analysis of the chloroplast genome with a lognormal calibration prior. For analytical details see the manuscript. Tip labels for all taxa newly sampled in this analysis, Linnaean binomials were used. For all taxa sampled in previous work, sample codes were used to match voucher references in other works; for these refer to Folk et al., Systematic Biology, 66(3): 320–337; refer also to the associated Dryad deposition, https://doi.org/10.5061/dryad.cd546 (in which see Online Appendix 1).
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Title BEAST dating analysis -- chloroplast data, truncated normal prior
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Description BEAST analysis of the chloroplast genome with a truncated normal calibration prior. For analytical details see the manuscript. Tip labels for all taxa newly sampled in this analysis, Linnaean binomials were used. For all taxa sampled in previous work, sample codes were used to match voucher references in other works; for these refer to Folk et al., Systematic Biology, 66(3): 320–337; refer also to the associated Dryad deposition, https://doi.org/10.5061/dryad.cd546 (in which see Online Appendix 1).
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Title BEAST dating analysis -- nuclear data, lognormal prior
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Description BEAST analysis of the nuclear genes with a lognormal calibration prior. For analytical details see the manuscript. Tip labels for all taxa newly sampled in this analysis, Linnaean binomials were used. For all taxa sampled in previous work, sample codes were used to match voucher references in other works; for these refer to Folk et al., Systematic Biology, 66(3): 320–337; refer also to the associated Dryad deposition, https://doi.org/10.5061/dryad.cd546 (in which see Online Appendix 1).
Download BEAST_nuc_lognormal_reps1to6.tre (68.60 Kb)
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Title BEAST dating analysis -- nuclear data, truncated normal prior
Downloaded 4 times
Description BEAST analysis of the nuclear genes with a truncated normal calibration prior. For analytical details see the manuscript. Tip labels for all taxa newly sampled in this analysis, Linnaean binomials were used. For all taxa sampled in previous work, sample codes were used to match voucher references in other works; for these refer to Folk et al., Systematic Biology, 66(3): 320–337; refer also to the associated Dryad deposition, https://doi.org/10.5061/dryad.cd546 (in which see Online Appendix 1).
Download BEAST_nuc_truncated_reps1to6.tre (68.43 Kb)
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Title Predicted niche occupancy profiles -- narrow-buffer models
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Description Predicted niche occupancy profiles for narrow-buffer models. These are CSV files where the second column represents the variable value for a left-hand bin break-point, and the third column represents the weight for the bin to the right of this. For variable numbering see the translation table in this deposition. Each file represents one variable for one species.
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Title Predicted niche occupancy profiles -- wide-buffer models
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Description Predicted niche occupancy profiles for wide-buffer models. These are CSV files where the second column represents the variable value for a left-hand bin break-point, and the third column represents the weight for the bin to the right of this. For variable numbering see the translation table in this deposition. Each file represents one variable for one species.
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Title Predicted niche occupancy profiles -- distance-buffer models
Description Predicted niche occupancy profiles for distance-buffer models. These are CSV files where the second column represents the variable value for a left-hand bin break-point, and the third column represents the weight for the bin to the right of this. For variable numbering see the translation table in this deposition. Each file represents one variable for one species.
Download pnos_distancebuffer.zip (1.033 Mb)
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Title Model suitability ASC files -- narrow-buffer models
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Description Model suitability rasters for narrow-buffer models from Maxent. These were the rasters used for predicted niche occupancy calculations.
Download all_asc_narrowbuffer.zip (246.9 Mb)
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Title Model suitability ASC files -- distance-buffer models
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Description Model suitability rasters for distance-buffer models from Maxent. These were the rasters used for predicted niche occupancy calculations.
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Title Model suitability ASC files -- wide-buffer models
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Description Model suitability rasters for wide-buffer models from Maxent. These were the rasters used for predicted niche occupancy calculations.
Download all_asc_widebuffer.zip (351.3 Mb)
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Title Variable numbering translate table
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Description An excel sheet explaining variable numbering for ancestral reconstruction analyses. A column also describes the native units of these, which in some cases differ by a factor of 10 from publication figures in order to save space in ASCII representations.
Download ryan_heucheraoriginal_explain.xlsx (31.74 Kb)
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Title Binary suitability prediction for Mitella MRCA: Holocene climatic optimum, narrow-buffer models
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Description This is the suitability prediction for the MRCA of Mitella s.s. (Mitella nuda + Mitella diphylla) for the Holocene climatic optimum (6k years ago), using narrow-buffer models and binary maps.
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Title Binary suitability prediction for California Heuchera MRCA: Holocene climatic optimum, narrow-buffer models
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Description This is the suitability prediction for the MRCA of the California Heuchera clade (Heuchera caespitosa, Heuchera abramsii, Heuchera elegans, Heuchera parishii, Heuchera hirsutissima) for the Holocene climatic optimum (6k years ago), using narrow-buffer models and binary maps.
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Title Binary suitability prediction for Mitella MRCA: Last Glacial Maximum, narrow-buffer models
Description This is the suitability prediction for the MRCA of Mitella s.s. (Mitella nuda + Mitella diphylla) for the Last Glacial Maximum (22k years ago), using narrow-buffer models and binary maps.
Download BINARY_final_range_product_source.tif (124.4 Mb)
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Title Binary suitability prediction for California Heuchera MRCA: Last Glacial Maximum, narrow-buffer models
Downloaded 1 time
Description This is the suitability prediction for the MRCA of the California Heuchera clade (Heuchera caespitosa, Heuchera abramsii, Heuchera elegans, Heuchera parishii, Heuchera hirsutissima) for the Last Glacial Maximum (22k years ago), using narrow-buffer models and binary maps.
Download BINARY_final_range_product_hybrid.tif (124.4 Mb)
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Title Binary suitability prediction for Mitella MRCA: Last interglacial, narrow-buffer models
Downloaded 1 time
Description This is the suitability prediction for the MRCA of Mitella s.s. (Mitella nuda + Mitella diphylla) for the last interglacial (120k-140k years ago), using narrow-buffer models and binary maps.
Download BINARY_final_range_product_source.tif (124.4 Mb)
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Title Binary suitability prediction for California Heuchera MRCA: Last interglacial, narrow-buffer models
Description This is the suitability prediction for the MRCA of the California Heuchera clade (Heuchera caespitosa, Heuchera abramsii, Heuchera elegans, Heuchera parishii, Heuchera hirsutissima) for the last interglacial (120k-140k years ago), using narrow-buffer models and binary maps.
Download BINARY_final_range_product_hybrid.tif (124.4 Mb)
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Title Binary suitability prediction for Mitella MRCA: Holocene climatic optimum, wide-buffer models
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Description This is the suitability prediction for the MRCA of Mitella s.s. (Mitella nuda + Mitella diphylla) for the Holocene climatic optimum (6k years ago), using wide-buffer models and binary maps.
Download BINARY_final_range_product_source.tif (124.4 Mb)
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Title Binary suitability prediction for California Heuchera MRCA: Holocene climatic optimum, narrow-buffer modelsData from: Geographic range dynamics drove ancient hybridization in a lineage of angiosperms.
Downloaded 1 time
Description This is the suitability prediction for the MRCA of the California Heuchera clade (Heuchera caespitosa, Heuchera abramsii, Heuchera elegans, Heuchera parishii, Heuchera hirsutissima) for the Holocene climatic optimum (6k years ago), using wide-buffer models and binary maps.
Download BINARY_final_range_product_hybrid.tif (124.4 Mb)
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Title Binary suitability prediction for Mitella MRCA: Holocene climatic optimum, wide-buffer models
Downloaded 1 time
Description This is the suitability prediction for the MRCA of Mitella s.s. (Mitella nuda + Mitella diphylla) for the Last Glacial Maximum (22k years ago), using wide-buffer models and binary maps.
Download BINARY_final_range_product_source.tif (124.4 Mb)
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Title Binary suitability prediction for California Heuchera MRCA: Last Glacial Maximum, wide-buffer models
Downloaded 1 time
Description This is the suitability prediction for the MRCA of the California Heuchera clade (Heuchera caespitosa, Heuchera abramsii, Heuchera elegans, Heuchera parishii, Heuchera hirsutissima) for the Last Glacial Maximum (22k years ago), using wide-buffer models and binary maps.
Download BINARY_final_range_product_hybrid.tif (124.4 Mb)
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Title Binary suitability prediction for Mitella MRCA: Last interglacial, wide-buffer models
Downloaded 1 time
Description This is the suitability prediction for the MRCA of Mitella s.s. (Mitella nuda + Mitella diphylla) for the last interglacial (120k-140k years ago), using wide-buffer models and binary maps.
Download BINARY_final_range_product_source.tif (124.4 Mb)
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Title Binary suitability prediction for California Heuchera MRCA: Last interglacial, wide-buffer models
Description This is the suitability prediction for the MRCA of the California Heuchera clade (Heuchera caespitosa, Heuchera abramsii, Heuchera elegans, Heuchera parishii, Heuchera hirsutissima) for the last interglacial (120k-140k years ago), using wide-buffer models and binary maps.
Download BINARY_final_range_product_hybrid.tif (124.4 Mb)
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Title Binary suitability prediction for Mitella MRCA: Holocene climatic optimum, distance-buffer models
Downloaded 1 time
Description This is the suitability prediction for the MRCA of Mitella s.s. (Mitella nuda + Mitella diphylla) for the Holocene climatic optimum (6k years ago), using distance-buffer models and binary maps.
Download BINARY_final_range_product_source.tif (124.4 Mb)
Details View File Details
Title Binary suitability prediction for California Heuchera MRCA: Holocene climatic optimum, distance-buffer models
Description This is the suitability prediction for the MRCA of the California Heuchera clade (Heuchera caespitosa, Heuchera abramsii, Heuchera elegans, Heuchera parishii, Heuchera hirsutissima) for the Holocene climatic optimum (6k years ago), using distance-buffer models and binary maps.
Download BINARY_final_range_product_hybrid.tif (124.4 Mb)
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Title Binary suitability prediction for Mitella MRCA: Last Glacial Maximum, distance-buffer models
Downloaded 3 times
Description This is the suitability prediction for the MRCA of Mitella s.s. (Mitella nuda + Mitella diphylla) for the Last Glacial Maximum (22k years ago), using distance-buffer models and binary maps.
Download BINARY_final_range_product_source.tif (31.11 Mb)
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Title Binary suitability prediction for California Heuchera MRCA: Last Glacial Maximum, distance-buffer models
Downloaded 1 time
Description This is the suitability prediction for the MRCA of the California Heuchera clade (Heuchera caespitosa, Heuchera abramsii, Heuchera elegans, Heuchera parishii, Heuchera hirsutissima) for the Last Glacial Maximum (22k years ago), using distance-buffer models and binary maps.
Download BINARY_final_range_product_hybrid.tif (31.11 Mb)
Details View File Details
Title Binary suitability prediction for Mitella MRCA: Last interglacial, distance-buffer models
Downloaded 1 time
Description This is the suitability prediction for the MRCA of Mitella s.s. (Mitella nuda + Mitella diphylla) for the last interglacial (120k-140k years ago), using distance-buffer models and binary maps.
Download BINARY_final_range_product_source.tif (124.4 Mb)
Details View File Details
Title Binary suitability prediction for California Heuchera MRCA: Last interglacial, distance-buffer models
Downloaded 1 time
Description This is the suitability prediction for the MRCA of the California Heuchera clade (Heuchera caespitosa, Heuchera abramsii, Heuchera elegans, Heuchera parishii, Heuchera hirsutissima) for the last interglacial (120k-140k years ago), using distance-buffer models and binary maps.
Download BINARY_final_range_product_hybrid.tif (124.4 Mb)
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Title Binned-probabilities suitability prediction for Mitella MRCA: Holocene climatic optimum, narrow-buffer models
Downloaded 1 time
Description This is the suitability prediction for the MRCA of Mitella s.s. (Mitella nuda + Mitella diphylla) for the Holocene climatic optimum (6k years ago), using narrow-buffer models and normalized binned-probabilities maps.
Download final_range_product_source.normalized.tif (124.4 Mb)
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Title Binned-probabilities suitability prediction for California Heuchera MRCA: Holocene climatic optimum, narrow-buffer models
Downloaded 1 time
Description This is the suitability prediction for the MRCA of the California Heuchera clade (Heuchera caespitosa, Heuchera abramsii, Heuchera elegans, Heuchera parishii, Heuchera hirsutissima) for the Holocene climatic optimum (6k years ago), using narrow-buffer models and normalized binned-probabilities maps.
Download final_range_product_hybrid.normalized.tif (124.4 Mb)
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Title Binned-probabilities suitability prediction for Mitella MRCA: Last Glacial Maximum, narrow-buffer models
Downloaded 1 time
Description This is the suitability prediction for the MRCA of Mitella s.s. (Mitella nuda + Mitella diphylla) for the Last Glacial Maximum (22k years ago), using narrow-buffer models and normalized binned-probabilities maps.
Download final_range_product_source.normalized.tif (124.4 Mb)
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Title Binned-probabilities suitability prediction for California Heuchera MRCA: Last Glacial Maximum, narrow-buffer models
Downloaded 1 time
Description This is the suitability prediction for the MRCA of the California Heuchera clade (Heuchera caespitosa, Heuchera abramsii, Heuchera elegans, Heuchera parishii, Heuchera hirsutissima) for the Last Glacial Maximum (22k years ago), using narrow-buffer models and normalized binned-probabilities maps.
Download final_range_product_hybrid.normalized.tif (124.4 Mb)
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Title Binned-probabilities suitability prediction for Mitella MRCA: Last interglacial, narrow-buffer models
Downloaded 1 time
Description This is the suitability prediction for the MRCA of Mitella s.s. (Mitella nuda + Mitella diphylla) for the last interglacial (120k-140k years ago), using narrow-buffer models and normalized binned-probabilities maps.
Download final_range_product_source.normalized.tif (124.4 Mb)
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Title Binned-probabilities suitability prediction for California Heuchera MRCA: Last interglacial, narrow-buffer models
Description This is the suitability prediction for the MRCA of the California Heuchera clade (Heuchera caespitosa, Heuchera abramsii, Heuchera elegans, Heuchera parishii, Heuchera hirsutissima) for the last interglacial (120k-140k years ago), using narrow-buffer models and normalized binned-probabilities maps.
Download final_range_product_hybrid.normalized.tif (124.4 Mb)
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Title Binned-probabilities suitability prediction for Mitella MRCA: Holocene climatic optimum, wide-buffer models
Downloaded 1 time
Description This is the suitability prediction for the MRCA of Mitella s.s. (Mitella nuda + Mitella diphylla) for the Holocene climatic optimum (6k years ago), using wide-buffer models and normalized binned-probabilities maps.
Download final_range_product_source.normalized.tif (124.4 Mb)
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Title Binned-probabilities suitability prediction for California Heuchera MRCA: Holocene climatic optimum, wide-buffer models
Downloaded 1 time
Description This is the suitability prediction for the MRCA of the California Heuchera clade (Heuchera caespitosa, Heuchera abramsii, Heuchera elegans, Heuchera parishii, Heuchera hirsutissima) for the Holocene climatic optimum (6k years ago), using wide-buffer models and normalized binned-probabilities maps.
Download final_range_product_hybrid.normalized.tif (124.4 Mb)
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Title Binned-probabilities suitability prediction for Mitella MRCA: Last Glacial Maximum, wide-buffer models
Downloaded 1 time
Description This is the suitability prediction for the MRCA of Mitella s.s. (Mitella nuda + Mitella diphylla) for the Last Glacial Maximum (22k years ago), using wide-buffer models and normalized binned-probabilities maps.
Download final_range_product_source.normalized.tif (124.4 Mb)
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Title Binned-probabilities suitability prediction for California Heuchera MRCA: Last Glacial Maximum, wide-buffer models
Downloaded 1 time
Description This is the suitability prediction for the MRCA of the California Heuchera clade (Heuchera caespitosa, Heuchera abramsii, Heuchera elegans, Heuchera parishii, Heuchera hirsutissima) for the Last Glacial Maximum (22k years ago), using wide-buffer models and normalized binned-probabilities maps.
Download final_range_product_hybrid.normalized.tif (124.4 Mb)
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Title Binned-probabilities suitability prediction for Mitella MRCA: Last interglacial, wide-buffer models
Downloaded 1 time
Description This is the suitability prediction for the MRCA of Mitella s.s. (Mitella nuda + Mitella diphylla) for the last interglacial (120k-140k years ago), using wide-buffer models and normalized binned-probabilities maps.
Download final_range_product_source.normalized.tif (124.4 Mb)
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Title Binned-probabilities suitability prediction for California Heuchera MRCA: Last interglacial, wide-buffer models
Downloaded 1 time
Description This is the suitability prediction for the MRCA of the California Heuchera clade (Heuchera caespitosa, Heuchera abramsii, Heuchera elegans, Heuchera parishii, Heuchera hirsutissima) for the last interglacial (120k-140k years ago), using wide-buffer models and normalized binned-probabilities maps.
Download final_range_product_hybrid.normalized.tif (124.4 Mb)
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Title Binned-probabilities suitability prediction for Mitella MRCA: Holocene climatic optimum, distance-buffer models
Description This is the suitability prediction for the MRCA of Mitella s.s. (Mitella nuda + Mitella diphylla) for the Holocene climatic optimum (6k years ago), using distance-buffer models and normalized binned-probabilities maps.
Download final_range_product_source.normalized.tif (124.4 Mb)
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Title Binned-probabilities suitability prediction for California Heuchera MRCA: Holocene climatic optimum, distance-buffer models
Description This is the suitability prediction for the MRCA of the California Heuchera clade (Heuchera caespitosa, Heuchera abramsii, Heuchera elegans, Heuchera parishii, Heuchera hirsutissima) for the Holocene climatic optimum (6k years ago), using distance-buffer models and normalized binned-probabilities maps.
Download final_range_product_hybrid.normalized.tif (124.4 Mb)
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Title Binned-probabilities suitability prediction for Mitella MRCA: Last Glacial Maximum, distance-buffer models
Description This is the suitability prediction for the MRCA of Mitella s.s. (Mitella nuda + Mitella diphylla) for the Last Glacial Maximum (22k years ago), using distance-buffer models and normalized binned-probabilities maps.
Download final_range_product_source.normalized.tif (31.11 Mb)
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Title Binned-probabilities suitability prediction for California Heuchera MRCA: Last Glacial Maximum, distance-buffer models
Description This is the suitability prediction for the MRCA of the California Heuchera clade (Heuchera caespitosa, Heuchera abramsii, Heuchera elegans, Heuchera parishii, Heuchera hirsutissima) for the Last Glacial Maximum (22k years ago), using distance-buffer models and normalized binned-probabilities maps.
Download final_range_product_hybrid.normalized.tif (31.11 Mb)
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Title Binned-probabilities suitability prediction for Mitella MRCA: Last interglacial, distance-buffer models
Description This is the suitability prediction for the MRCA of Mitella s.s. (Mitella nuda + Mitella diphylla) for the last interglacial (120k-140k years ago), using distance-buffer models and normalized binned-probabilities maps.
Download final_range_product_source.normalized.tif (124.4 Mb)
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Title Binned-probabilities suitability prediction for California Heuchera MRCA: Last interglacial, distance-buffer models
Description This is the suitability prediction for the MRCA of the California Heuchera clade (Heuchera caespitosa, Heuchera abramsii, Heuchera elegans, Heuchera parishii, Heuchera hirsutissima) for the last interglacial (120k-140k years ago), using distance-buffer models and normalized binned-probabilities maps.
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Title Simplified chloroplast genome phylogeny
Downloaded 1 time
Description This is a simplified version of Supplemental Figure S4, showing the most salient clades recovered with additional phylogenomic sampling.
Download RAxML_bipartitions.partitionedchloroplast...ed.pdf (85.47 Kb)
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Title Chloroplast phylogenomic analysis -- best tree with bipartition frequencies
Downloaded 1 time
Description Analysis of all taxa (i.e., in some cases multiple accessions per species). Tip labels for all taxa newly sampled in this analysis, Linnaean binomials were used. For all taxa sampled in previous work, sample codes were used to match voucher references in other works; for these refer to Folk et al., Systematic Biology, 66(3): 320–337; refer also to the associated Dryad deposition, https://doi.org/10.5061/dryad.cd546 (in which see Online Appendix 1).
Download RAxML_bipartitions.partitionedchloroplast...ae.tre (4.899 Kb)
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Title Chloroplast phylogenomic analysis -- bootstrap trees
Downloaded 1 time
Description Analysis of all taxa (i.e., in some cases multiple accessions per species). Tip labels for all taxa newly sampled in this analysis, Linnaean binomials were used. For all taxa sampled in previous work, sample codes were used to match voucher references in other works; for these refer to Folk et al., Systematic Biology, 66(3): 320–337; refer also to the associated Dryad deposition, https://doi.org/10.5061/dryad.cd546 (in which see Online Appendix 1).
Download RAxML_bootstrap.partitionedchloroplastnolakelae (3.925 Mb)
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Title Chloroplast phylogenomic analysis -- concatenated alignment
Downloaded 1 time
Description Analysis of all taxa (i.e., in some cases multiple accessions per species). Tip labels for all taxa newly sampled in this analysis, Linnaean binomials were used. For all taxa sampled in previous work, sample codes were used to match voucher references in other works; for these refer to Folk et al., Systematic Biology, 66(3): 320–337; refer also to the associated Dryad deposition, https://doi.org/10.5061/dryad.cd546 (in which see Online Appendix 1).
Download NewAndOldCpTaxa.aligned.fixed.nolakelae.phy (11.86 Mb)
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When using this data, please cite the original publication:

Folk RA, Visger CJ, Soltis PS, Soltis DE, Guralnick RP (2018) Geographic range dynamics drove ancient hybridization in a lineage of angiosperms. The American Naturalist 192(2): 171-187. https://doi.org/10.1086/698120

Additionally, please cite the Dryad data package:

Folk RA, Visger CJ, Soltis PS, Soltis DE, Guralnick RP (2018) Data from: Geographic range dynamics drove ancient hybridization in a lineage of angiosperms. Dryad Digital Repository. https://doi.org/10.5061/dryad.7cr0c76
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